Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 1.7e-179 634.0 877 100.0
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 8.4e-155 552.0 877 92.0
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 2.4e-154 550.4 877 89.5
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 2.6e-148 530.4 878 88.5
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 2.5e-143 513.8 875 88.5
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 2.5e-143 513.8 875 88.3
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 9.6e-143 511.9 875 88.3
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 3.6e-142 510.0 875 86.5
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.8e-141 507.7 876 87.4
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 5.3e-141 506.1 876 86.8
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 3.5e-137 493.4 868 88.1
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 1.2e-132 478.4 877 83.8
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 5.0e-115 419.9 877 78.2
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 1.5e-98 365.2 748 91.3
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 2.5e-74 284.6 866 70.9
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 2.1e-73 281.6 871 75.9
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 6.1e-73 280.0 871 68.4
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 8.0e-73 279.6 866 75.9
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 1.5e-71 275.4 873 74.0
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 5.7e-71 273.5 866 75.5
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 5.7e-71 273.5 873 71.7
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.2e-70 271.6 866 75.4
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.6e-68 265.4 876 72.6
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 3.0e-67 261.2 875 68.5
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 8.6e-67 259.6 877 67.8
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 7.3e-66 256.5 869 73.4
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 7.3e-66 256.5 879 72.5
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.6e-65 255.4 880 61.8
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 1.6e-65 255.4 871 65.9
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.8e-64 251.9 873 70.4
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 4.0e-64 250.8 870 73.0
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.5e-63 248.8 867 73.4
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 3.4e-63 247.7 872 72.6
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 4.4e-63 247.3 869 72.8
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 4.9e-62 243.8 873 70.1
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.6e-60 238.8 869 72.6
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 3.5e-60 237.7 871 72.6
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.5e-58 232.3 875 70.3
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 9.5e-58 229.6 874 72.0
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 1.6e-57 228.8 880 65.6
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 9.8e-55 219.5 873 76.2
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 2.3e-51 208.4 878 66.7
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 3.3e-50 204.5 872 68.0
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 4.0e-48 197.6 880 66.6
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 4.0e-48 197.6 874 68.1
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.5e-47 195.7 881 67.3
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 2.0e-47 195.3 876 70.7
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 2.0e-47 195.3 871 61.5
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 3.4e-47 194.5 886 69.9
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 4.9e-46 190.7 877 64.3
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 2.1e-44 185.3 878 62.0
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 2.7e-44 184.9 750 78.4
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 2.7e-44 184.9 870 66.1
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 4.3e-42 177.6 878 68.5
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 4.3e-42 177.6 885 57.1
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 1.2e-41 176.0 879 59.4
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 1.6e-41 175.6 885 61.8
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 2.1e-41 175.3 888 59.7
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 4.7e-41 174.1 878 64.7
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 6.2e-41 173.7 875 60.3
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 8.1e-41 173.3 880 61.9
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 2.4e-40 171.8 869 59.7
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 3.1e-40 171.4 879 70.8
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 5.2e-40 170.6 374 61.8
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 1.5e-39 169.1 374 63.1
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 1.5e-39 169.1 378 61.6
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 3.4e-39 167.9 874 64.9
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.3e-38 166.0 875 61.8
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.3e-38 166.0 875 61.8
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.7e-38 165.6 875 68.0
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 2.2e-38 165.2 362 62.7
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 8.4e-38 163.3 377 61.0
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 2.4e-37 161.8 362 62.2
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 2.4e-37 161.8 874 61.2
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 1.2e-36 159.5 897 63.7
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 2.1e-36 158.7 362 61.9
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 4.6e-36 157.5 890 58.1
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 7.8e-36 156.8 869 69.4
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.0e-35 156.4 859 63.1
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.9e-34 152.1 199 43.2
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 1.3e-33 149.4 197 39.1
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 9.9e-31 139.8 442 49.3
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.7e-30 139.0 406 46.1
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 4.2e-29 134.4 372 58.6
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 5.4e-29 134.0 381 57.2
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 7.9e-28 130.2 349 60.7
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.5e-26 125.9 366 58.5
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 4.3e-26 124.4 339 61.7
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 9.6e-26 123.2 339 61.7
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 9.6e-26 123.2 392 63.8
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 1.3e-25 122.9 148 43.2
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 1.6e-25 122.5 180 38.3
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 1.4e-24 119.4 143 44.1
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 2.4e-24 118.6 194 53.1
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 5.8e-23 114.0 390 55.6
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 9.9e-23 113.2 152 43.4
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 2.9e-22 111.7 385 55.6
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 9.3e-21 106.7 400 64.0
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 5.1e-19 100.9 149 40.3
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 9.6e-18 96.7 144 66.0
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 2.1e-17 95.5 94 48.9
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.2e-15 89.7 63 65.1
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 2.6e-15 88.6 197 31.5
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 2.3e-11 75.5 189 25.9
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.7e-06 59.3 80 38.8


User provided reference genes

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