Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 1.6e-100 369.4 188 100.0
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 3.2e-88 328.6 185 91.4
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 3.6e-87 325.1 182 90.7
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 3.6e-87 325.1 185 87.0
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 3.6e-87 325.1 185 87.0
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 1.0e-86 323.6 185 87.0
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 1.8e-86 322.8 185 85.9
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 3.3e-85 318.5 188 87.8
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 1.3e-84 316.6 179 86.6
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 1.8e-83 312.8 173 89.0
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 1.6e-82 309.7 177 89.8
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 2.0e-82 309.3 179 87.7
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 6.5e-73 277.7 174 79.3
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 2.3e-65 252.7 182 69.2
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 1.2e-58 230.3 172 68.0
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 3.8e-57 225.3 177 63.3
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 8.6e-57 224.2 181 61.9
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 8.6e-57 224.2 181 61.9
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 3.3e-56 222.2 177 63.3
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 5.6e-56 221.5 177 61.6
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 9.5e-56 220.7 179 61.5
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 1.6e-55 219.9 177 61.6
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.6e-55 219.9 177 62.7
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 2.1e-55 219.5 178 59.0
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 2.1e-55 219.5 177 62.7
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 2.1e-55 219.5 175 62.3
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 2.8e-55 219.2 181 60.2
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 2.8e-55 219.2 181 60.8
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 6.1e-55 218.0 178 59.0
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 1.0e-54 217.2 178 59.0
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.4e-54 216.9 178 58.4
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 1.4e-54 216.9 173 62.4
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 1.8e-54 216.5 181 60.8
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 3.0e-54 215.7 181 58.6
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 3.0e-54 215.7 181 59.7
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 3.0e-54 215.7 173 63.0
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 5.2e-54 214.9 184 58.7
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 8.9e-54 214.2 172 62.2
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 8.9e-54 214.2 181 58.0
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 1.2e-53 213.8 182 58.2
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 1.5e-53 213.4 178 59.0
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 1.5e-53 213.4 177 59.9
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 2.0e-53 213.0 179 59.2
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 3.4e-53 212.2 177 58.8
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 3.4e-53 212.2 172 61.0
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 4.4e-53 211.8 177 58.2
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 7.5e-53 211.1 179 58.1
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 9.8e-53 210.7 181 59.1
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 2.2e-52 209.5 174 60.3
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 3.7e-52 208.8 176 59.7
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 4.9e-52 208.4 172 58.7
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 1.1e-51 207.2 185 56.8
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 2.4e-51 206.1 177 58.8
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 7.0e-51 204.5 172 56.4
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 1.6e-50 203.4 172 55.8
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.6e-50 203.4 172 56.4
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 2.0e-50 203.0 175 57.1
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 2.7e-50 202.6 172 58.7
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.7e-50 202.6 172 56.4
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 3.5e-50 202.2 176 55.1
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 3.5e-50 202.2 169 56.8
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 4.6e-50 201.8 156 62.8
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 5.9e-50 201.4 196 54.1
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 7.8e-50 201.1 171 57.9
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.0e-49 200.7 172 55.8
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 1.7e-49 199.9 180 53.9
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 3.0e-49 199.1 176 57.4
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 3.0e-49 199.1 166 58.4
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 8.6e-49 197.6 180 53.9
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 1.1e-48 197.2 176 55.7
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 2.5e-48 196.1 156 62.8
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 4.3e-48 195.3 178 53.4
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 5.6e-48 194.9 173 56.6
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 4.7e-47 191.8 159 59.1
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 4.7e-47 191.8 156 60.9
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 4.7e-47 191.8 181 52.5
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 8.0e-47 191.0 171 56.1
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 1.1e-46 190.7 154 60.4
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 2.3e-46 189.5 171 57.9
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 1.2e-45 187.2 170 54.7
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 2.0e-45 186.4 142 64.1
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 2.9e-44 182.6 160 56.2
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 1.9e-43 179.9 178 50.6
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 7.0e-43 177.9 154 57.1
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 9.2e-43 177.6 174 51.1
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 1.2e-42 177.2 176 50.0
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 2.3e-41 172.9 191 49.2
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 3.9e-41 172.2 191 49.2
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 8.1e-39 164.5 188 47.3
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 6.8e-38 161.4 136 58.8
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 1.2e-37 160.6 190 44.2
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 5.8e-37 158.3 136 57.4
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 9.9e-37 157.5 131 58.8
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 1.3e-36 157.1 109 77.1
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 2.4e-35 152.9 181 44.8
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 3.2e-35 152.5 130 56.2
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 1.2e-34 150.6 195 42.1
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 2.1e-34 149.8 131 56.5
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 6.0e-34 148.3 132 56.8
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 2.3e-33 146.4 132 54.5
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 5.6e-32 141.7 132 59.1
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.6e-31 140.2 168 43.5
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 1.6e-31 140.2 132 52.3
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 2.2e-28 129.8 98 61.2
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 3.8e-28 129.0 104 61.5
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 3.0e-25 119.4 177 40.7
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 4.3e-24 115.5 136 47.1
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 1.5e-21 107.1 152 40.1
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 3.8e-20 102.4 165 36.4
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 2.5e-16 89.7 156 39.7
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 6.2e-15 85.1 159 32.7
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 7.6e-13 78.2 157 33.1
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.7e-12 77.0 171 30.4
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 2.1e-07 60.1 48 54.2
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 6.2e-07 58.5 69 44.9


User provided reference genes

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