Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2977 Capsella rubella HOM05D006662 ORTHO05D008378 5.8e-115 417.5 205 100.0
AT2G15890 Arabidopsis thaliana HOM05D006662 ORTHO05D008378 7.6e-99 364.0 207 89.9
AL3G47680 Arabidopsis lyrata HOM05D006662 ORTHO05D008378 2.7e-96 355.5 206 86.9
Sp3g29170 Schrenkiella parvula HOM05D006662 ORTHO05D008378 3.6e-93 345.1 210 83.3
CARHR106220 Cardamine hirsuta HOM05D006662 ORTHO05D008378 2.0e-91 339.3 207 84.1
Thhalv10022827m.g Eutrema salsugineum HOM05D006662 ORTHO05D008378 7.6e-91 337.4 209 79.9
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 1.3e-87 326.6 206 81.1
C03p56690 Brassica napus HOM05D006662 ORTHO05D008378 1.3e-87 326.6 206 81.1
BolC3t17953H Brassica oleracea HOM05D006662 ORTHO05D008378 1.3e-87 326.6 206 81.1
A03p45640 Brassica napus HOM05D006662 ORTHO05D008378 8.7e-87 323.9 206 80.1
BraA03t13696Z Brassica rapa HOM05D006662 ORTHO05D008378 4.3e-86 321.6 206 79.6
BcaB08g34616 Brassica carinata HOM05D006662 ORTHO05D008378 4.9e-82 308.1 170 88.2
Aa31LG8G13410 Aethionema arabicum HOM05D006662 ORTHO05D008378 7.1e-81 304.3 215 72.6
THA.LOC104807344 Tarenaya hassleriana HOM05D006662 ORTHO05D008378 7.9e-72 274.2 212 63.7
CiPaw.05G058200 Carya illinoinensis HOM05D006662 ORTHO05D008378 1.6e-61 240.0 208 59.6
Cpa.g.sc62.73 Carica papaya HOM05D006662 ORTHO05D008378 2.1e-61 239.6 214 59.3
Thecc.02G093600 Theobroma cacao HOM05D006662 ORTHO05D008378 4.8e-61 238.4 211 59.2
FAN15G0063 Fragaria x ananassa HOM05D006662 ORTHO05D008378 4.5e-59 231.9 207 60.9
CSS0011742 Camellia sinensis var. sinensis HOM05D006662 ORTHO05D008378 7.6e-59 231.1 212 55.2
Sed0017443 Sechium edule HOM05D006662 ORTHO05D008378 1.0e-58 230.7 188 62.2
FAN20G1592 Fragaria x ananassa HOM05D006662 ORTHO05D008378 1.3e-58 230.3 181 65.2
Eucgr.I01209 Eucalyptus grandis HOM05D006662 ORTHO05D008378 2.2e-58 229.6 182 63.2
FvH4_2g07110 Fragaria vesca HOM05D006662 ORTHO05D008378 2.2e-58 229.6 207 59.9
RcHm_v2.0_Chr6g0259611 Rosa chinensis HOM05D006662 ORTHO05D008378 5.0e-58 228.4 207 58.9
Gohir.A12G027000 Gossypium hirsutum HOM05D006662 ORTHO05D008378 1.4e-57 226.9 211 55.9
TWI75G0095 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 3.2e-57 225.7 182 59.3
ClCG09G017640 Citrullus lanatus HOM05D006662 ORTHO05D008378 4.2e-57 225.3 214 56.1
Manes.17G095800 Manihot esculenta HOM05D006662 ORTHO05D008378 4.2e-57 225.3 213 56.8
MD05G1073200 Malus domestica HOM05D006662 ORTHO05D008378 5.5e-57 224.9 215 57.7
Prupe.8G113800 Prunus persica HOM05D006662 ORTHO05D008378 1.2e-56 223.8 181 61.9
AUR62011410 Chenopodium quinoa HOM05D006662 ORTHO05D008378 1.6e-56 223.4 164 61.6
Gohir.D12G026500 Gossypium hirsutum HOM05D006662 ORTHO05D008378 1.6e-56 223.4 209 55.5
Ah.01g019950 Amaranthus hybridus HOM05D006662 ORTHO05D008378 2.1e-56 223.0 166 62.7
MELO3C021923.2 Cucumis melo HOM05D006662 ORTHO05D008378 3.6e-56 222.2 216 55.6
Sed0006883 Sechium edule HOM05D006662 ORTHO05D008378 3.6e-56 222.2 211 55.9
CANSAT25G1076 Cannabis sativa HOM05D006662 ORTHO05D008378 6.1e-56 221.5 210 58.1
Cfa004939 Carpinus fangiana HOM05D006662 ORTHO05D008378 7.9e-56 221.1 208 55.8
CsaV3_2G014240 Cucumis sativus L. HOM05D006662 ORTHO05D008378 7.9e-56 221.1 181 60.8
Peaxi162Scf00016g01334 Petunia axillaris HOM05D006662 ORTHO05D008378 7.9e-56 221.1 206 55.3
Potri.009G108200 Populus trichocarpa HOM05D006662 ORTHO05D008378 1.0e-55 220.7 212 55.7
AUR62016649 Chenopodium quinoa HOM05D006662 ORTHO05D008378 1.3e-55 220.3 165 60.6
Hma1.2p1_0584F.1_g183200 Hydrangea macrophylla HOM05D006662 ORTHO05D008378 1.8e-55 219.9 168 63.1
COL.COLO4_11735 Corchorus olitorius HOM05D006662 ORTHO05D008378 2.3e-55 219.5 205 55.6
GSVIVG01031844001 Vitis vinifera HOM05D006662 ORTHO05D008378 3.0e-55 219.2 209 56.9
arahy.Tifrunner.gnm1.ann1.XIH6CG Arachis hypogaea HOM05D006662 ORTHO05D008378 3.9e-55 218.8 168 63.1
QL11p039030 Quercus lobata HOM05D006662 ORTHO05D008378 5.1e-55 218.4 174 63.2
QL11p040314 Quercus lobata HOM05D006662 ORTHO05D008378 6.7e-55 218.0 174 63.2
arahy.Tifrunner.gnm1.ann1.WYH7K2 Arachis hypogaea HOM05D006662 ORTHO05D008378 8.7e-55 217.6 210 53.8
Sc18g0004870 Simmondsia chinensis HOM05D006662 ORTHO05D008378 8.7e-55 217.6 163 60.7
Ciclev10029278m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.1e-54 217.2 215 54.4
MD10G1087700 Malus domestica HOM05D006662 ORTHO05D008378 1.1e-54 217.2 215 56.7
TWI79G0535 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 1.1e-54 217.2 164 62.8
VMungo0251G2580 Vigna mungo HOM05D006662 ORTHO05D008378 1.1e-54 217.2 181 60.8
HanXRQChr16g0505251 Helianthus annuus HOM05D006662 ORTHO05D008378 3.3e-54 215.7 174 59.8
Nitab4.5_0013034g0030 Nicotiana tabacum HOM05D006662 ORTHO05D008378 5.7e-54 214.9 210 52.4
ECA234G3259 Erigeron canadensis HOM05D006662 ORTHO05D008378 7.4e-54 214.5 172 62.2
Nitab4.5_0001401g0110 Nicotiana tabacum HOM05D006662 ORTHO05D008378 7.4e-54 214.5 210 52.9
Oeu034073.1 Olea europaea HOM05D006662 ORTHO05D008378 9.7e-54 214.2 174 59.8
PGSC0003DMG400025927 Solanum tuberosum HOM05D006662 ORTHO05D008378 1.3e-53 213.8 179 59.2
Oeu034074.1 Olea europaea HOM05D006662 ORTHO05D008378 1.6e-53 213.4 174 59.2
PGR142G1799 Punica granatum HOM05D006662 ORTHO05D008378 1.6e-53 213.4 205 54.6
Lsat_1_v5_gn_7_87521 Lactuca sativa HOM05D006662 ORTHO05D008378 2.2e-53 213.0 198 53.5
MSTRG.20127 Avicennia marina HOM05D006662 ORTHO05D008378 6.3e-53 211.5 179 57.0
Lalb_Chr16g0384501 Lupinus albus HOM05D006662 ORTHO05D008378 6.3e-53 211.5 168 60.7
MSTRG.16773 Avicennia marina HOM05D006662 ORTHO05D008378 8.2e-53 211.1 184 56.0
Glyma.02G136700 Glycine max HOM05D006662 ORTHO05D008378 8.2e-53 211.1 206 53.4
TAR381G0443 Trochodendron aralioides HOM05D006662 ORTHO05D008378 1.1e-52 210.7 173 60.1
Gorai.008G026800 Gossypium raimondii HOM05D006662 ORTHO05D008378 1.4e-52 210.3 236 49.6
Ca_18646_v3 Cicer arietinum L. HOM05D006662 ORTHO05D008378 2.4e-52 209.5 183 56.8
Lalb_Chr05g0218931 Lupinus albus HOM05D006662 ORTHO05D008378 2.4e-52 209.5 180 59.4
Ciclev10029277m.g Citrus clementina HOM05D006662 ORTHO05D008378 5.3e-52 208.4 223 50.7
DCAR_022073 Daucus carota HOM05D006662 ORTHO05D008378 5.3e-52 208.4 183 55.2
Solyc01g108910.4 Solanum lycopersicum HOM05D006662 ORTHO05D008378 5.3e-52 208.4 173 59.5
Sopen01g051110 Solanum pennellii HOM05D006662 ORTHO05D008378 5.3e-52 208.4 173 59.5
Haze_02471 Corylus avellana HOM05D006662 ORTHO05D008378 1.2e-51 207.2 232 50.9
Phvul.003G295900 Phaseolus vulgaris HOM05D006662 ORTHO05D008378 1.2e-51 207.2 187 54.5
MBI16_g19891_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 1.5e-51 206.8 164 60.4
TAR625G0716 Trochodendron aralioides HOM05D006662 ORTHO05D008378 2.6e-51 206.1 207 52.2
Cc02_g18370 Coffea canephora HOM05D006662 ORTHO05D008378 5.9e-51 204.9 164 60.4
Lj4g0000402 Lotus japonicus HOM05D006662 ORTHO05D008378 5.9e-51 204.9 176 58.0
PSO541G1188 Papaver somniferum HOM05D006662 ORTHO05D008378 5.9e-51 204.9 168 57.7
PSO675G4443 Papaver somniferum HOM05D006662 ORTHO05D008378 5.9e-51 204.9 186 53.2
CDE04G2620 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 1.0e-50 204.1 208 52.4
unitig_60.g25450 Utricularia gibba HOM05D006662 ORTHO05D008378 1.7e-50 203.4 168 56.0
Nn6g32129 Nelumbo nucifera HOM05D006662 ORTHO05D008378 2.2e-50 203.0 209 51.7
TPR.G23518 Trifolium pratense HOM05D006662 ORTHO05D008378 3.8e-50 202.2 178 56.7
ECA236G2218 Erigeron canadensis HOM05D001803 ORTHO05D001686 1.1e-49 200.7 175 56.6
Sabra09G0082500 Salix brachista HOM05D006662 ORTHO05D008378 1.1e-49 200.7 199 55.3
ATR0733G082 Amborella trichopoda HOM05D006662 ORTHO05D008378 4.2e-49 198.7 207 52.7
Atru.chr5.2838 Acer truncatum HOM05D006662 ORTHO05D008378 9.4e-49 197.6 168 61.3
Migut.B00297 Erythranthe guttata HOM05D006662 ORTHO05D008378 1.6e-48 196.8 149 61.1
CDE02G2985 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 2.7e-48 196.1 208 49.0
Medtr4g087160 Medicago truncatula HOM05D006662 ORTHO05D008378 4.6e-48 195.3 168 57.1
Psat7g120680 Pisum sativum HOM05D006662 ORTHO05D008378 4.6e-48 195.3 168 54.8
Oeu057667.1 Olea europaea HOM05D006662 ORTHO05D008378 3.0e-47 192.6 175 55.4
Duzib132G0812 Durio zibethinus HOM05D006662 ORTHO05D008378 5.1e-47 191.8 202 51.0
Manes.15G144700 Manihot esculenta HOM05D006662 ORTHO05D008378 5.1e-47 191.8 162 58.0
Glyma.07G208750 Glycine max HOM05D006662 ORTHO05D000003 2.0e-46 189.9 169 58.0
SalBow6G2487 Salvia bowleyana HOM05D006662 ORTHO05D008378 2.6e-43 179.5 199 48.7
SGA_v2.0_scaffold32G13129 Striga asiatica HOM05D006662 ORTHO05D008378 4.5e-43 178.7 173 53.2
Aqoxy6G00923 Aquilegia oxysepala HOM05D006662 ORTHO05D008378 7.7e-43 177.9 170 51.8
EL10Ac9g21803 Beta vulgaris HOM05D006662 ORTHO05D008378 1.0e-42 177.6 198 46.5
Hund06197 Selenicereus undatus HOM05D006662 ORTHO05D008378 2.4e-36 156.4 169 47.9
HPP92_017773 Vanilla planifolia HOM05D006662 ORTHO05D008378 2.7e-32 142.9 198 41.4
SEGI_00093 Sequoiadendron giganteum HOM05D006662 ORTHO05D008378 2.8e-29 132.9 168 44.0
Zm00001eb214110 Zea mays HOM05D006662 ORTHO05D008378 3.7e-29 132.5 183 39.3
Zm00001eb058550 Zea mays HOM05D006662 ORTHO05D008378 4.8e-29 132.1 185 38.9
Dinv23602 Davidia involucrata HOM05D000546 ORTHO05D000398 1.1e-28 131.0 97 63.9
Lj9A364T65 Lonicera japonica HOM05D006662 ORTHO05D008378 1.4e-28 130.6 220 37.3
Actinidia00472 Actinidia chinensis HOM05D006662 ORTHO05D008378 1.8e-28 130.2 159 45.3
Pp3c25_14850 Physcomitrium patens HOM05D006662 ORTHO05D008378 1.2e-22 110.9 193 33.7
AagrBONN_evm.TU.Sc2ySwM_117.2125 Anthoceros agrestis HOM05D006662 ORTHO05D008378 1.5e-22 110.5 199 33.7
SMO351G0555 Selaginella moellendorffii HOM05D006662 ORTHO05D008378 2.0e-22 110.2 185 35.1
Duzib052G0855 Durio zibethinus HOM05D006662 ORTHO05D008378 3.7e-21 105.9 102 54.9
Peaxi162Scf00068g00075 Petunia axillaris HOM05D006662 ORTHO05D008378 2.0e-19 100.1 93 51.6
Mapoly0184s0005 Marchantia polymorpha HOM05D006662 ORTHO05D008378 2.7e-19 99.8 194 30.4
HanXRQChr16g0505241 Helianthus annuus HOM05D000009 ORTHO05D000008 2.8e-16 89.7 105 47.6
Pp3c5_28350 Physcomitrium patens HOM05D006662 ORTHO05D008378 5.2e-15 85.5 180 30.0
Peaxi162Scf00140g10022 Petunia axillaris HOM05D006662 ORTHO05D008378 1.3e-13 80.9 105 44.8
Os03g0765500 Oryza sativa ssp. japonica HOM05D006662 ORTHO05D008378 2.8e-13 79.7 139 35.3
Rhsim11G0170000 Rhododendron simsii HOM05D006662 ORTHO05D008378 5.2e-07 58.9 107 34.6


User provided reference genes

Program Settings