Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 1.2e-64 250.4 200 100.0
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 6.1e-61 238.0 200 81.0
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 5.2e-60 235.0 200 92.5
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 1.3e-58 230.3 201 80.1
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 1.8e-57 226.5 122 95.9
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 4.1e-57 225.3 122 95.1
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 5.3e-57 224.9 122 95.9
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 1.2e-56 223.8 123 96.7
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 1.6e-56 223.4 123 95.9
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 1.6e-56 223.4 123 95.9
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 1.6e-56 223.4 123 95.9
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 2.1e-53 213.0 122 90.2
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 2.3e-47 193.0 129 80.6
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 4.0e-44 182.2 124 82.3
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 4.0e-44 182.2 124 82.3
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 3.5e-40 169.1 121 72.7
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 1.4e-36 157.1 125 66.4
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 2.3e-36 156.4 124 66.1
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 3.0e-36 156.0 123 65.9
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 4.0e-36 155.6 123 68.3
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 8.9e-36 154.5 128 64.1
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 8.9e-36 154.5 124 68.5
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 1.2e-35 154.1 122 66.4
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 1.2e-35 154.1 122 66.4
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 1.2e-35 154.1 122 66.4
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 1.2e-35 154.1 122 63.9
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 2.6e-35 152.9 122 66.4
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 2.6e-35 152.9 123 66.7
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 9.8e-35 151.0 122 65.6
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 9.8e-35 151.0 122 64.8
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 1.3e-34 150.6 122 63.9
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 1.3e-34 150.6 122 64.8
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 1.3e-34 150.6 124 64.5
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 2.2e-34 149.8 129 63.6
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 2.9e-34 149.4 121 62.0
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 2.9e-34 149.4 122 64.8
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 2.9e-34 149.4 123 65.0
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 2.9e-34 149.4 122 63.1
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 2.9e-34 149.4 122 63.9
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 6.4e-34 148.3 122 63.9
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 8.3e-34 147.9 122 63.1
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 4.1e-33 145.6 122 63.1
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 7.0e-33 144.8 96 74.0
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 7.0e-33 144.8 124 66.1
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 9.2e-33 144.4 123 62.6
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 1.2e-32 144.1 112 68.8
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 2.0e-32 143.3 125 61.6
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 2.7e-32 142.9 123 61.8
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 2.7e-32 142.9 114 64.9
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 3.5e-32 142.5 122 61.5
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 3.5e-32 142.5 122 61.5
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 3.5e-32 142.5 122 61.5
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 3.5e-32 142.5 114 67.5
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 3.5e-32 142.5 130 63.8
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 6.0e-32 141.7 127 62.2
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 6.0e-32 141.7 126 63.5
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 6.0e-32 141.7 128 59.4
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 6.0e-32 141.7 127 62.2
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 6.0e-32 141.7 122 61.5
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 1.0e-31 141.0 128 61.7
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 1.0e-31 141.0 122 63.9
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 1.0e-31 141.0 122 62.3
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 1.0e-31 141.0 122 60.7
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 1.0e-31 141.0 122 64.8
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 1.0e-31 141.0 114 64.9
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 1.0e-31 141.0 114 64.9
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 1.3e-31 140.6 114 66.7
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 1.3e-31 140.6 114 64.9
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 1.7e-31 140.2 125 60.8
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 2.3e-31 139.8 122 63.1
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 3.0e-31 139.4 122 63.1
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 8.6e-31 137.9 129 58.1
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.1e-30 137.5 89 75.3
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 1.1e-30 137.5 126 58.7
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 1.9e-30 136.7 123 60.2
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 3.3e-30 136.0 126 62.7
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 5.6e-30 135.2 128 60.2
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 5.6e-30 135.2 122 63.1
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 7.3e-30 134.8 125 61.6
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 1.6e-29 133.7 116 61.2
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 1.6e-29 133.7 129 58.1
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 1.6e-29 133.7 125 60.0
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 1.6e-29 133.7 114 61.4
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 2.1e-29 133.3 124 60.5
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 2.1e-29 133.3 76 88.2
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 3.6e-29 132.5 174 47.1
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 3.6e-29 132.5 126 62.7
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.1e-28 131.0 120 61.7
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 1.1e-28 131.0 75 88.0
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 1.4e-28 130.6 115 60.9
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.4e-28 130.6 120 61.7
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 1.4e-28 130.6 165 47.9
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 1.8e-28 130.2 76 85.5
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 2.3e-28 129.8 126 57.9
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 6.8e-28 128.3 126 58.7
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 6.8e-28 128.3 104 67.3
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 8.9e-28 127.9 88 73.9
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 1.2e-27 127.5 89 71.9
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 2.0e-27 126.7 114 58.8
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 3.4e-27 125.9 120 55.8
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 4.4e-27 125.6 120 56.7
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 5.8e-27 125.2 114 58.8
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 7.5e-27 124.8 123 59.3
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 7.5e-27 124.8 153 50.3
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 2.4e-25 119.8 89 68.5
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 4.1e-25 119.0 116 56.9
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 4.1e-25 119.0 93 71.0
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 7.0e-25 118.2 122 59.0
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 1.6e-24 117.1 117 54.7
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 2.0e-24 116.7 110 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 2.7e-24 116.3 75 76.0
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 4.6e-24 115.5 114 53.5
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 6.6e-23 111.7 177 42.9
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 4.3e-22 109.0 114 53.5
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 1.2e-21 107.5 140 47.1
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 8.1e-21 104.8 73 72.6
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 2.6e-19 99.8 100 58.0
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 3.4e-19 99.4 110 49.1
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 1.1e-17 94.4 83 62.7
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 2.1e-16 90.1 226 31.0
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 6.0e-16 88.6 89 58.4
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 1.0e-15 87.8 131 41.2
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 6.6e-15 85.1 52 78.8
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 5.8e-11 72.0 81 50.6
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 9.9e-11 71.2 95 49.5
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 1.3e-10 70.9 80 50.0
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 3.8e-10 69.3 52 69.2
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 9.2e-09 64.7 67 49.3
Lsat_1_v5_gn_5_63380 Lactuca sativa HOM05D000113 ORTHO05D012184 1.5e-06 57.4 48 62.5
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 4.3e-06 55.8 45 57.8
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 9.6e-06 54.7 38 68.4


User provided reference genes

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