Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 0.0e+00 1182.2 630 100.0
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 1.8e-308 1062.0 630 89.7
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 1.0e-303 1046.2 630 88.7
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 4.6e-288 994.2 626 85.6
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 1.0e-287 993.0 631 84.3
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 4.0e-276 954.5 659 79.1
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 1.4e-273 946.0 659 78.3
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 9.3e-273 943.3 659 78.1
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 6.0e-272 940.6 659 78.0
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 9.6e-270 933.3 684 75.6
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 2.6e-267 925.2 684 75.0
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 5.5e-241 837.8 630 74.3
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 1.2e-216 756.9 631 68.3
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 9.1e-212 740.7 481 82.3
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 2.4e-172 609.8 647 54.9
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 3.2e-172 609.4 649 54.2
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 7.1e-172 608.2 639 53.7
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 4.6e-171 605.5 644 53.4
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 6.0e-171 605.1 646 53.7
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 7.8e-171 604.7 644 55.4
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 1.0e-170 604.4 644 55.7
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.8e-167 593.6 649 52.4
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 2.2e-165 586.6 651 52.8
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 3.2e-164 582.8 645 52.9
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 4.6e-163 578.9 640 53.1
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 4.6e-163 578.9 653 53.1
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 7.8e-163 578.2 641 52.0
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 2.3e-162 576.6 636 52.2
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 6.6e-162 575.1 653 52.8
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 2.5e-161 573.2 663 50.7
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.3e-161 572.8 663 50.7
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.6e-161 572.0 650 52.3
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 7.3e-161 571.6 634 51.6
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 9.6e-161 571.2 647 52.6
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.8e-160 569.7 650 52.3
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 1.1e-159 567.8 639 52.3
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 1.8e-159 567.0 676 50.3
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 5.3e-159 565.5 655 51.0
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 1.5e-158 563.9 648 50.6
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 2.0e-158 563.5 648 50.2
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 2.4e-156 556.6 632 51.4
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 7.1e-156 555.1 606 53.0
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 7.1e-156 555.1 633 50.9
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 1.2e-155 554.3 677 49.3
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 4.6e-155 552.4 649 51.5
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 6.0e-155 552.0 699 48.6
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 6.0e-155 552.0 640 50.6
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 3.9e-154 549.3 653 51.8
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 5.6e-153 545.4 669 51.0
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 2.8e-152 543.1 639 50.4
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 5.3e-151 538.9 661 49.8
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 7.6e-150 535.0 627 50.7
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 1.3e-149 534.3 647 50.5
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 1.7e-149 533.9 639 48.8
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 4.9e-149 532.3 640 49.5
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 1.1e-148 531.2 657 49.2
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 3.2e-148 529.6 640 49.4
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 4.2e-148 529.3 638 49.5
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 6.0e-147 525.4 628 50.3
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 3.3e-145 519.6 782 43.9
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 3.3e-145 519.6 649 49.3
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 4.3e-145 519.2 642 48.1
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 1.6e-144 517.3 642 49.2
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 3.1e-143 513.1 642 48.4
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 6.9e-143 511.9 523 55.3
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 2.0e-142 510.4 630 49.5
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 4.5e-142 509.2 639 46.5
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 1.3e-141 507.7 667 46.3
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 2.9e-141 506.5 642 48.0
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 6.5e-141 505.4 594 51.7
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 2.1e-139 500.4 677 48.2
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 6.7e-138 495.4 641 48.8
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 4.8e-136 489.2 665 47.7
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 4.5e-134 482.6 595 48.9
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 4.5e-134 482.6 628 49.0
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 7.6e-134 481.9 756 42.6
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 1.1e-127 461.5 636 44.0
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 6.9e-127 458.8 623 45.7
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 3.4e-126 456.4 635 43.9
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 5.9e-126 455.7 498 53.2
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 3.8e-125 453.0 651 44.5
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 9.4e-124 448.4 468 53.8
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 1.2e-123 448.0 449 55.7
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 6.1e-123 445.7 446 56.1
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 9.1e-119 431.8 649 41.1
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 1.3e-117 427.9 587 44.6
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.7e-109 401.0 421 55.3
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 6.1e-107 392.5 660 38.9
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 5.2e-106 389.4 631 42.2
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 5.7e-105 386.0 473 49.5
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 4.8e-104 382.9 641 39.8
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 8.2e-104 382.1 697 37.0
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 1.9e-100 370.9 663 38.5
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 4.7e-99 366.3 645 37.5
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 1.2e-97 361.7 513 43.7
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 8.3e-96 355.5 489 45.6
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 7.2e-92 342.4 670 35.5
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 2.1e-91 340.9 640 38.0
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 3.0e-90 337.0 659 35.7
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.7e-85 321.2 443 44.5
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 5.6e-84 316.2 412 47.8
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 2.8e-75 287.3 498 36.1
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 5.2e-66 256.5 216 63.0
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.2e-62 245.4 838 29.4
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 2.1e-51 208.0 165 66.1
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 1.5e-49 201.8 320 44.1
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 2.6e-49 201.1 737 28.9
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 1.3e-48 198.7 208 53.4
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 2.2e-48 198.0 260 48.5
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 5.4e-47 193.4 277 49.5
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 7.1e-47 193.0 815 27.2
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 2.4e-42 177.9 153 61.4
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.7e-40 171.8 150 62.0
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 7.1e-31 139.8 210 41.0
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.8e-29 135.2 182 43.4
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 3.2e-23 114.4 192 36.5
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 1.6e-22 112.1 101 56.4
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.5e-20 104.8 107 57.9
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 2.1e-19 101.7 166 38.0
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 1.8e-18 98.6 78 66.7
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.3e-18 97.1 92 60.9
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.4e-17 94.4 93 61.3
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 3.1e-10 71.2 67 59.7
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 7.7e-09 66.6 90 41.1
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 2.5e-07 61.6 50 70.0
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 2.5e-07 61.6 73 46.6
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 3.2e-07 61.2 46 63.0


User provided reference genes

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