Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2867 Capsella rubella HOM05D009157 ORTHO05D011114 7.7e-51 203.4 92 100.0
Thhalv10016013m.g Eutrema salsugineum HOM05D009157 ORTHO05D011114 1.5e-25 119.4 93 57.0
BNapus_Darmor_BZH_scaffold_232p00090 Brassica napus HOM05D009157 ORTHO05D011114 5.7e-22 107.5 92 55.4
C02p19560 Brassica napus HOM05D009157 ORTHO05D011114 5.7e-22 107.5 92 55.4
BolC2t08093H Brassica oleracea HOM05D009157 ORTHO05D011114 5.7e-22 107.5 92 55.4
A02p11740 Brassica napus HOM05D009157 ORTHO05D011114 4.8e-21 104.4 92 54.3
BraA02t06239Z Brassica rapa HOM05D009157 ORTHO05D011114 4.8e-21 104.4 92 54.3
BraA06t24784Z Brassica rapa HOM05D009157 ORTHO05D011114 1.9e-17 92.4 83 54.2
CARHR136110 Cardamine hirsuta HOM05D009157 ORTHO05D011114 5.5e-17 90.9 83 54.2
C05p19330 Brassica napus HOM05D009157 ORTHO05D011114 1.6e-16 89.4 83 53.0
A03p15620 Brassica napus HOM05D009157 ORTHO05D011114 3.6e-16 88.2 86 46.5
A06p16740 Brassica napus HOM05D009157 ORTHO05D011114 1.4e-15 86.3 81 53.1
C03p18290 Brassica napus HOM05D009157 ORTHO05D011114 1.4e-15 86.3 84 45.2
BolC3t14227H Brassica oleracea HOM05D009157 ORTHO05D011114 1.4e-15 86.3 84 45.2
BolC5t30635H Brassica oleracea HOM05D009157 ORTHO05D011114 1.8e-15 85.9 81 54.3
A03p15650 Brassica napus HOM05D009157 ORTHO05D011114 3.0e-15 85.1 84 45.2
BraA03t10857Z Brassica rapa HOM05D009157 ORTHO05D011114 3.0e-15 85.1 84 45.2
A06p16760 Brassica napus HOM05D009157 ORTHO05D011114 4.0e-15 84.7 83 49.4
BraA06t24782Z Brassica rapa HOM05D009157 ORTHO05D011114 5.2e-15 84.3 81 51.9
BraA06t24778Z Brassica rapa HOM05D009157 ORTHO05D011114 8.8e-15 83.6 83 49.4
AL872U10010 Arabidopsis lyrata HOM05D009157 ORTHO05D011114 8.3e-13 77.0 84 48.8
AL4G38970 Arabidopsis lyrata HOM05D009157 ORTHO05D031338 5.4e-12 74.3 88 47.7
AT2G40995 Arabidopsis thaliana HOM05D009157 ORTHO05D011114 2.0e-11 72.4 83 43.4
Carub.0004s2332 Capsella rubella HOM05D009157 ORTHO05D011114 2.0e-11 72.4 84 45.2
Thhalv10015663m.g Eutrema salsugineum HOM05D009157 ORTHO05D011114 2.0e-11 72.4 81 48.1
CARHR247500 Cardamine hirsuta HOM05D022922 ORTHO05D024512 2.7e-11 72.0 83 51.8
BolC3t15237H Brassica oleracea HOM05D009779 ORTHO05D013534 1.3e-10 69.7 85 45.9
A09p26810 Brassica napus HOM05D009779 ORTHO05D013534 2.3e-10 68.9 85 45.9
BraA09t38252Z Brassica rapa HOM05D009779 ORTHO05D013534 2.3e-10 68.9 85 45.9
A03p09040 Brassica napus HOM05D009779 ORTHO05D013534 3.8e-10 68.2 85 44.7
C03p10520 Brassica napus HOM05D009779 ORTHO05D013534 3.8e-10 68.2 85 44.7
C03p28770 Brassica napus HOM05D009779 ORTHO05D013534 5.0e-10 67.8 85 47.1
BolC3t15236H Brassica oleracea HOM05D009779 ORTHO05D013534 8.6e-10 67.0 85 44.7
Carub.0005s0711 Capsella rubella HOM05D009157 ORTHO05D011114 2.5e-09 65.5 86 44.2
C03p28790 Brassica napus HOM05D009779 ORTHO05D013534 4.3e-09 64.7 81 44.4
BolC5t31817H Brassica oleracea HOM05D009779 ORTHO05D013534 4.3e-09 64.7 82 48.8
CARHR037560 Cardamine hirsuta HOM05D009157 ORTHO05D011114 4.3e-09 64.7 81 42.0
AT2G41997 Arabidopsis thaliana HOM05D009157 ORTHO05D031338 9.5e-09 63.5 86 41.9
BraA03t10228Z Brassica rapa HOM05D009779 ORTHO05D013534 9.5e-09 63.5 83 38.6
BraA04t18722Z Brassica rapa HOM05D009779 ORTHO05D033680 1.2e-08 63.2 82 43.9
AL2G14480 Arabidopsis lyrata HOM05D012646 ORTHO05D017422 2.8e-08 62.0 89 34.8
BolC3t13534H Brassica oleracea HOM05D009779 ORTHO05D013534 2.8e-08 62.0 86 41.9
Carub.0002s0742 Capsella rubella HOM05D014230 ORTHO05D015926 4.7e-08 61.2 84 39.3
Carub.0002s0757 Capsella rubella HOM05D014230 ORTHO05D015926 4.7e-08 61.2 84 39.3
Carub.0002s0743 Capsella rubella HOM05D014230 ORTHO05D015926 6.1e-08 60.8 84 39.3
AT4G08028 Arabidopsis thaliana HOM05D009779 ORTHO05D011114 1.4e-07 59.7 81 40.7
A03p24160 Brassica napus HOM05D009779 ORTHO05D013534 1.4e-07 59.7 85 43.5
BraA03t11625Z Brassica rapa HOM05D009779 ORTHO05D013534 1.4e-07 59.7 85 43.5
Carub.0002s0741 Capsella rubella HOM05D014230 ORTHO05D015926 1.4e-07 59.7 81 38.3
Thhalv10023786m.g Eutrema salsugineum HOM05D040754 ORTHO05D011114 1.4e-07 59.7 82 40.2
AT1G56553 Arabidopsis thaliana HOM05D014230 ORTHO05D015926 8.9e-07 57.0 87 42.5
Carub.0006s2661 Capsella rubella HOM05D009779 ORTHO05D011114 1.5e-06 56.2 81 39.5
BolC4t28532H Brassica oleracea HOM05D009779 ORTHO05D033680 2.0e-06 55.8 74 43.2
Thhalv10023783m.g Eutrema salsugineum HOM05D040754 ORTHO05D011114 2.0e-06 55.8 82 36.6
A05p32520 Brassica napus HOM05D009779 ORTHO05D013534 2.6e-06 55.5 87 42.5
BraA05t22078Z Brassica rapa HOM05D009779 ORTHO05D013534 2.6e-06 55.5 87 42.5
Carub.0008s0699 Capsella rubella HOM05D008895 ORTHO05D010761 3.4e-06 55.1 82 36.6
Thhalv10015910m.g Eutrema salsugineum HOM05D009997 ORTHO05D011114 5.7e-06 54.3 82 39.0
AT5G42232 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 7.5e-06 53.9 84 39.3
C05p49150 Brassica napus HOM05D009779 ORTHO05D013534 7.5e-06 53.9 87 41.4
BolC5t33657H Brassica oleracea HOM05D009779 ORTHO05D013534 7.5e-06 53.9 87 41.4


User provided reference genes

Program Settings