Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 7.8e-106 387.1 191 100.0
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.2e-98 363.2 193 92.2
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.7e-97 359.4 191 90.6
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.0e-97 358.6 191 91.1
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.1e-96 356.7 191 89.5
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.1e-96 356.7 191 91.1
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.5e-96 356.3 191 89.5
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.5e-96 355.5 191 89.0
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 3.3e-96 355.1 191 89.0
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 4.3e-96 354.8 191 89.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 9.5e-96 353.6 191 89.0
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.1e-91 340.1 189 84.1
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.3e-88 328.2 191 82.7
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.0e-82 307.8 186 76.3
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.0e-81 305.4 186 75.8
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 6.6e-81 304.3 186 77.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.6e-81 304.3 174 81.0
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 3.3e-80 302.0 186 78.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.2e-79 300.1 186 75.8
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.6e-79 299.7 186 77.4
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 2.4e-78 295.8 186 74.2
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.4e-78 295.8 179 77.7
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 5.2e-78 294.7 190 76.3
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 8.9e-78 293.9 192 75.0
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.0e-77 292.7 189 73.5
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 4.4e-77 291.6 190 70.5
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.8e-77 291.2 185 73.5
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 9.9e-77 290.4 192 75.0
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.3e-76 290.0 191 73.3
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.7e-76 289.7 175 76.0
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.2e-76 289.3 191 73.3
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.9e-76 288.9 187 72.2
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.8e-76 288.5 175 77.7
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 3.8e-76 288.5 191 75.4
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 8.4e-76 287.3 191 71.2
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.4e-76 287.3 188 72.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.4e-75 286.6 186 73.7
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.2e-75 285.4 186 72.6
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 4.2e-75 285.0 175 74.9
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.2e-75 285.0 175 74.9
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.2e-75 285.0 188 71.3
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 5.4e-75 284.6 184 72.3
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 5.4e-75 284.6 186 72.0
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 7.1e-75 284.3 188 71.3
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 7.1e-75 284.3 188 71.3
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.2e-74 283.5 182 73.1
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 2.1e-74 282.7 184 71.2
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.1e-74 282.7 191 69.6
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.7e-74 282.3 186 72.0
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 4.6e-74 281.6 182 71.4
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 7.8e-74 280.8 186 69.9
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.3e-73 280.0 188 69.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.7e-73 279.6 172 76.2
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.0e-73 278.9 189 68.3
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 3.0e-73 278.9 171 75.4
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.9e-73 278.5 188 71.8
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.1e-73 278.1 188 70.2
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 8.7e-73 277.3 172 77.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.7e-73 277.3 163 79.8
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.1e-72 276.9 172 74.4
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.9e-72 276.2 175 73.1
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.5e-72 275.8 184 70.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.5e-72 275.8 174 75.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.5e-72 275.8 172 76.7
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.5e-72 275.8 172 75.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 9.6e-72 273.9 172 72.7
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.8e-71 272.3 181 71.8
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 2.8e-71 272.3 172 73.3
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.6e-71 271.9 163 77.3
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 4.8e-71 271.6 184 69.0
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.2e-71 271.2 172 73.8
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.2e-71 271.2 172 73.8
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 8.1e-71 270.8 169 74.6
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.8e-70 269.6 186 68.3
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 3.1e-70 268.9 172 72.1
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 4.0e-70 268.5 158 79.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 4.0e-70 268.5 184 68.5
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-69 266.9 172 73.8
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.5e-69 266.5 172 73.8
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.5e-69 266.5 187 66.3
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 2.6e-69 265.8 134 94.0
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 4.5e-69 265.0 171 76.0
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 9.9e-69 263.8 174 72.4
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.3e-68 263.5 184 69.0
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.2e-68 262.7 172 72.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 8.4e-68 260.8 170 71.2
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 9.3e-67 257.3 185 62.2
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.6e-66 256.5 169 69.8
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.1e-66 256.1 156 76.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 4.6e-66 255.0 170 72.4
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 6.0e-66 254.6 163 70.6
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.3e-65 253.4 172 70.3
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.8e-65 253.1 168 70.8
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.8e-65 253.1 172 66.9
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.8e-65 253.1 168 71.4
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.0e-65 252.3 164 73.2
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 5.1e-65 251.5 163 70.6
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 8.7e-65 250.8 163 71.2
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.3e-63 246.9 164 72.0
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.1e-63 246.1 172 68.0
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.6e-63 245.4 162 71.0
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 4.8e-63 245.0 163 68.7
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 8.1e-63 244.2 169 68.0
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-62 243.4 168 69.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-62 243.4 168 69.6
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.4e-62 243.4 172 68.0
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 5.3e-62 241.5 170 67.6
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 6.9e-62 241.1 168 69.6
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.9e-62 241.1 169 65.1
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 9.0e-62 240.7 162 70.4
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 9.0e-62 240.7 175 66.3
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.2e-61 240.4 169 66.9
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.2e-61 240.4 170 68.8
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.0e-61 239.6 167 70.1
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 5.8e-61 238.0 166 68.7
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.7e-60 236.5 163 69.9
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.7e-60 236.5 174 66.7
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 2.2e-60 236.1 168 63.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 3.8e-60 235.3 162 69.1
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 4.9e-60 235.0 169 65.1
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 8.4e-60 234.2 160 68.8
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.1e-59 233.8 188 62.8
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.4e-59 233.4 169 65.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.9e-59 233.0 168 66.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 5.5e-59 231.5 170 62.4
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 7.1e-59 231.1 164 66.5
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.6e-58 229.9 159 66.7
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.7e-58 229.2 160 67.5
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.7e-58 229.2 169 62.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.3e-57 226.9 164 64.6
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 2.3e-57 226.1 170 61.8
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.5e-56 223.4 168 67.3
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-56 223.4 168 67.3
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.5e-56 222.6 161 64.6
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.6e-56 221.5 168 66.7
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.4e-56 221.1 168 66.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.1e-55 219.5 151 68.9
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.4e-54 216.9 134 73.1
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.8e-54 216.5 160 62.5
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 2.0e-53 213.0 160 64.4
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.6e-53 212.6 182 61.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.8e-53 211.5 192 56.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.2e-52 209.5 164 62.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.1e-51 207.2 155 63.2
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.4e-51 206.8 176 59.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 2.1e-50 203.0 161 65.8
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.9e-50 201.1 155 61.3
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.1e-48 197.2 160 60.0
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.3e-48 195.3 172 52.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.7e-48 194.9 138 71.0
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.7e-47 192.2 156 63.5
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.8e-47 191.8 191 54.5
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.5e-45 186.8 133 66.9
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.6e-45 186.0 141 60.3
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.3e-44 183.7 162 59.3
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.2e-44 183.0 119 73.9
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.2e-42 177.2 164 53.7
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.8e-41 173.3 128 64.8
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.9e-41 172.2 177 50.8
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.2e-39 166.4 129 62.0
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.8e-39 166.0 169 50.9
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.3e-39 164.9 169 50.9
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.5e-35 152.9 116 67.2
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.5e-32 143.7 102 66.7
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.3e-32 142.5 90 74.4
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 7.4e-32 141.4 171 48.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.1e-30 136.0 150 42.7
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 3.4e-29 132.5 94 63.8
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.3e-28 130.6 91 62.6
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.8e-28 129.0 89 69.7
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 4.8e-23 112.1 73 65.8
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.2e-19 99.4 66 74.2
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.0e-17 94.4 79 57.0
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.9e-12 76.3 107 41.1
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.6e-10 70.5 70 51.4
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-10 70.1 69 52.2
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 3.0e-09 66.2 106 34.0
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 5.2e-09 65.5 36 75.0
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.8e-09 65.1 36 77.8
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 8.8e-09 64.7 180 29.4
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.7e-07 60.5 64 39.1
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.8e-06 57.0 32 75.0
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-06 56.6 36 66.7


User provided reference genes

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