Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 4.0e-128 461.5 237 100.0
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 1.3e-107 393.3 237 86.5
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 4.6e-100 368.2 237 81.4
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 4.2e-93 345.1 239 77.0
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 1.4e-80 303.5 237 68.8
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 9.1e-80 300.8 237 69.6
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 1.3e-78 297.0 190 80.0
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 1.5e-77 293.5 238 68.9
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 1.5e-77 293.5 238 68.9
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 1.8e-75 286.6 238 67.2
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 8.8e-75 284.3 237 66.2
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 8.8e-75 284.3 237 66.7
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 3.9e-38 162.5 226 46.0
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 8.3e-33 144.8 227 40.1
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 2.8e-28 129.8 160 46.2
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 6.2e-28 128.6 163 40.5
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 1.4e-27 127.5 163 39.9
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 3.4e-26 122.9 161 42.9
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 2.7e-23 113.2 181 39.2
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 1.0e-22 111.3 154 39.0
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 1.3e-22 110.9 157 39.5
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 6.6e-22 108.6 155 40.6
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 6.6e-22 108.6 194 36.1
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 1.1e-21 107.8 171 40.4
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 1.1e-21 107.8 171 34.5
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 1.5e-21 107.5 128 44.5
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 1.9e-21 107.1 138 41.3
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 1.9e-21 107.1 156 41.0
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 1.9e-21 107.1 144 45.8
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 2.5e-21 106.7 138 41.3
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 3.3e-21 106.3 164 39.6
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 3.3e-21 106.3 153 41.8
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 3.3e-21 106.3 141 43.3
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 4.3e-21 105.9 161 39.8
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 4.3e-21 105.9 170 37.6
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 5.6e-21 105.5 122 44.3
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 7.3e-21 105.1 161 43.5
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 3.6e-20 102.8 138 40.6
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 8.1e-20 101.7 163 36.8
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 8.1e-20 101.7 168 36.3
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 1.4e-19 100.9 167 36.5
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 2.4e-19 100.1 142 40.8
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 2.4e-19 100.1 202 35.1
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 3.1e-19 99.8 133 42.9
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 3.1e-19 99.8 202 34.7
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 4.0e-19 99.4 200 34.5
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 6.8e-19 98.6 184 37.0
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 8.9e-19 98.2 221 31.7
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 1.2e-18 97.8 139 41.0
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 1.5e-18 97.4 185 36.8
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 1.5e-18 97.4 173 35.3
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 2.0e-18 97.1 130 38.5
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 2.6e-18 96.7 139 42.4
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 4.4e-18 95.9 130 38.5
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 7.6e-18 95.1 139 41.0
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 1.7e-17 94.0 154 34.4
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 1.7e-17 94.0 140 37.1
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 2.9e-17 93.2 129 41.9
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 6.4e-17 92.0 116 43.1
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 1.4e-16 90.9 147 35.4
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 2.4e-16 90.1 129 40.3
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 3.2e-16 89.7 121 42.1
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 3.2e-16 89.7 145 40.0
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 5.4e-16 89.0 153 35.9
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 9.3e-16 88.2 123 42.3
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 9.3e-16 88.2 96 46.9
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 1.2e-15 87.8 204 29.4
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 1.6e-15 87.4 123 41.5
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 2.1e-15 87.0 128 39.8
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 2.1e-15 87.0 211 32.2
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 2.7e-15 86.7 114 39.5
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 2.7e-15 86.7 134 40.3
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 2.7e-15 86.7 121 41.3
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.5e-15 86.3 147 34.7
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 6.0e-15 85.5 141 36.9
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 6.0e-15 85.5 151 34.4
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 1.3e-14 84.3 133 38.3
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 1.7e-14 84.0 125 39.2
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 2.3e-14 83.6 96 43.8
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.1e-13 81.3 181 32.6
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 1.1e-13 81.3 140 37.9
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 1.9e-13 80.5 122 40.2
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 2.5e-13 80.1 148 37.2
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 7.3e-13 78.6 188 29.8
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 7.3e-13 78.6 131 38.9
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 2.1e-12 77.0 155 35.5
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 4.8e-12 75.9 136 33.1
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 6.2e-12 75.5 86 50.0
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 1.5e-10 70.9 162 32.7
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 1.5e-10 70.9 150 34.0
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 1.5e-10 70.9 141 31.2
Migut.L00163 Erythranthe guttata HOM05D004728 ORTHO05D002375 9.9e-10 68.2 153 32.0
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 1.3e-09 67.8 141 31.2
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 6.4e-09 65.5 125 32.0
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 1.4e-08 64.3 155 29.0
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 3.2e-08 63.2 119 30.3
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 9.3e-08 61.6 141 31.2
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.2e-07 61.2 104 35.6
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.2e-07 61.2 104 35.6
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 1.2e-07 61.2 66 47.0
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 1.2e-07 61.2 143 31.5
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 1.6e-07 60.8 111 37.8
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 2.1e-07 60.5 122 29.5
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 2.7e-07 60.1 140 32.9
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 1.0e-06 58.2 164 31.7
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 3.0e-06 56.6 129 31.0
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.0e-06 56.6 148 28.4
Os08g0483600 Oryza sativa ssp. japonica HOM05D026744 ORTHO05D012887 3.9e-06 56.2 118 30.5
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 6.6e-06 55.5 88 37.5
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 6.6e-06 55.5 227 23.3
Os04g0450600 Oryza sativa ssp. japonica HOM05D021312 ORTHO05D012887 6.6e-06 55.5 133 27.1


User provided reference genes

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