Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 9.3e-211 736.9 445 100.0
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 3.3e-192 675.2 444 85.4
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 4.5e-165 585.1 444 73.6
AT1G32010 Arabidopsis thaliana HOM05D010629 ORTHO05D019745 1.2e-43 181.8 214 39.7
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 4.4e-35 153.3 206 33.5
AT5G38190 Arabidopsis thaliana HOM05D034490 ORTHO05D019745 4.4e-35 153.3 214 36.4
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 3.6e-29 133.7 215 32.1
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 1.4e-28 131.7 173 37.0
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 2.3e-28 131.0 173 36.4
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 5.2e-28 129.8 173 35.8
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 2.6e-27 127.5 167 36.5
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 9.8e-27 125.6 288 29.5
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 2.9e-26 124.0 155 38.1
AL7G45790 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.9e-25 121.3 303 28.7
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 3.0e-23 114.0 294 28.2
Sp7g05200 Schrenkiella parvula HOM05D002078 ORTHO05D005680 1.1e-22 112.1 176 30.7
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 4.3e-22 110.2 148 36.5
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 5.6e-22 109.8 308 28.6
Sp4g11160 Schrenkiella parvula HOM05D010772 ORTHO05D005680 9.5e-22 109.0 177 31.6
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 1.2e-21 108.6 158 32.3
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 2.1e-21 107.8 240 28.8
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 3.6e-21 107.1 172 30.8
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 8.1e-21 105.9 311 27.7
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 2.3e-20 104.4 174 32.8
BcaC04g21481 Brassica carinata HOM05D009676 ORTHO05D014479 4.9e-18 96.7 163 30.1
Sp4g04860 Schrenkiella parvula HOM05D010772 ORTHO05D005680 6.4e-18 96.3 157 29.3
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 1.2e-16 92.0 180 29.4
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 7.8e-16 89.4 180 29.4
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 2.3e-15 87.8 174 29.3
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 5.1e-15 86.7 188 29.3
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 6.6e-15 86.3 174 29.3
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 6.6e-15 86.3 185 28.1
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 8.6e-15 85.9 161 29.2
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 3.3e-14 84.0 174 28.2
Sp7g11540 Schrenkiella parvula HOM05D010529 ORTHO05D012528 3.3e-14 84.0 160 28.1
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 5.6e-14 83.2 89 41.6
BcaC01g04584 Brassica carinata HOM05D002078 ORTHO05D005680 2.1e-13 81.3 184 27.7
BolC8t47641H Brassica oleracea HOM05D002078 ORTHO05D005680 2.1e-13 81.3 169 30.2
BcaC03g16774 Brassica carinata HOM05D002078 ORTHO05D005680 4.7e-13 80.1 146 30.8
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.1e-13 79.3 185 25.4
BcaB05g24965 Brassica carinata HOM05D002078 ORTHO05D005680 8.1e-13 79.3 147 32.0
BcaC02g10668 Brassica carinata HOM05D002078 ORTHO05D005680 1.4e-12 78.6 187 28.3
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-12 78.2 167 26.3
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-12 78.2 185 25.4
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-12 78.2 167 25.1
BcaC02g10377 Brassica carinata HOM05D002078 ORTHO05D005680 1.8e-12 78.2 137 32.1
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.3e-12 77.8 185 25.4
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.3e-12 77.8 158 31.0
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.1e-12 77.4 167 25.7
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.1e-12 77.4 185 25.4
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.1e-12 77.4 185 24.9
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.0e-12 77.0 167 25.7
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.0e-12 77.0 167 26.3
BcaB06g27178 Brassica carinata HOM05D002078 ORTHO05D005680 4.0e-12 77.0 147 32.0
Carub.0009s0003 Capsella rubella HOM05D016834 ORTHO05D016863 4.0e-12 77.0 144 30.6
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.2e-12 76.6 167 25.7
C08p07900 Brassica napus HOM05D002078 ORTHO05D005680 5.2e-12 76.6 146 30.8
BcaC02g10933 Brassica carinata HOM05D002078 ORTHO05D005680 6.8e-12 76.3 137 32.1
BcaC07g37378 Brassica carinata HOM05D002078 ORTHO05D005680 6.8e-12 76.3 146 30.8
BcaC07g37462 Brassica carinata HOM05D002078 ORTHO05D005680 6.8e-12 76.3 156 28.2
BraA06t25464Z Brassica rapa HOM05D008596 ORTHO05D003268 6.8e-12 76.3 152 27.6
BcaC08g44804 Brassica carinata HOM05D002078 ORTHO05D005680 8.9e-12 75.9 135 30.4
BcaC03g16343 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-11 75.5 153 29.4
BcaC01g03754 Brassica carinata HOM05D002078 ORTHO05D005680 1.5e-11 75.1 164 29.3
BcaC02g11611 Brassica carinata HOM05D002078 ORTHO05D005680 1.5e-11 75.1 142 31.7
SpUn0003_0260 Schrenkiella parvula HOM05D010529 ORTHO05D012528 1.5e-11 75.1 131 29.0
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.0e-11 74.7 128 26.6
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.0e-11 74.7 167 24.6
BcaC04g21351 Brassica carinata HOM05D002078 ORTHO05D005680 2.6e-11 74.3 135 29.6
BcaC05g26934 Brassica carinata HOM05D002078 ORTHO05D005680 2.6e-11 74.3 135 31.1
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.4e-11 73.9 159 26.4
BcaC06g34587 Brassica carinata HOM05D002078 ORTHO05D005680 3.4e-11 73.9 139 30.9
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.4e-11 73.6 239 24.7
BcaC02g10452 Brassica carinata HOM05D002078 ORTHO05D005680 5.8e-11 73.2 135 30.4
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.6e-11 72.8 184 24.5
BcaC02g09148 Brassica carinata HOM05D002078 ORTHO05D005680 9.9e-11 72.4 146 30.8
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.3e-10 72.0 127 26.0
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.3e-10 72.0 127 26.0
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.3e-10 72.0 157 28.0
BcaC03g17686 Brassica carinata HOM05D002078 ORTHO05D005680 1.3e-10 72.0 135 29.6
BcaC04g20762 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-10 72.0 154 25.3
BcaC05g27552 Brassica carinata HOM05D002078 ORTHO05D005680 1.3e-10 72.0 135 29.6
BcaC06g35883 Brassica carinata HOM05D002078 ORTHO05D005680 1.3e-10 72.0 135 30.4
BcaC01g02138 Brassica carinata HOM05D002078 ORTHO05D005680 1.7e-10 71.6 145 28.3
BcaC05g28690 Brassica carinata HOM05D002078 ORTHO05D005680 1.7e-10 71.6 135 30.4
BcaC07g38368 Brassica carinata HOM05D002078 ORTHO05D005680 1.7e-10 71.6 135 31.1
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 1.7e-10 71.6 285 24.2
BcaB07g33910 Brassica carinata HOM05D002078 ORTHO05D005680 2.2e-10 71.2 146 30.1
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-10 71.2 169 25.4
BcaC06g35850 Brassica carinata HOM05D002078 ORTHO05D005680 2.2e-10 71.2 146 28.1
A05p19660 Brassica napus HOM05D008596 ORTHO05D003268 2.2e-10 71.2 158 26.6
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 2.2e-10 71.2 140 28.6
BcaC05g27553 Brassica carinata HOM05D002078 ORTHO05D005680 2.9e-10 70.9 135 29.6
A01p26930 Brassica napus HOM05D008596 ORTHO05D003268 2.9e-10 70.9 103 32.0
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 3.7e-10 70.5 289 23.2
Thhalv10023163m.g Eutrema salsugineum HOM05D010629 ORTHO05D016863 3.7e-10 70.5 103 35.0
BcaC05g26653 Brassica carinata HOM05D009676 ORTHO05D005680 6.4e-10 69.7 108 33.3
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 6.4e-10 69.7 122 27.9
Sp4g04760 Schrenkiella parvula HOM05D010772 ORTHO05D005680 6.4e-10 69.7 109 32.1
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 8.4e-10 69.3 136 30.1
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.4e-10 69.3 310 22.9
BcaC02g09798 Brassica carinata HOM05D002078 ORTHO05D005680 8.4e-10 69.3 157 29.3
BolC2t08631H Brassica oleracea HOM05D009676 ORTHO05D014479 8.4e-10 69.3 111 31.5
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.1e-09 68.9 166 25.3
BcaB08g35469 Brassica carinata HOM05D009676 ORTHO05D005680 1.1e-09 68.9 101 34.7
BcaC06g35846 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-09 68.9 173 29.5
BcaC08g43200 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-09 68.9 135 28.9
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.4e-09 68.6 127 25.2
Sp6g07550 Schrenkiella parvula HOM05D010772 ORTHO05D005680 1.4e-09 68.6 104 29.8
BcaC03g16508 Brassica carinata HOM05D002078 ORTHO05D005680 1.9e-09 68.2 129 30.2
BcaC02g11773 Brassica carinata HOM05D002078 ORTHO05D005680 2.4e-09 67.8 159 28.3
BcaC05g27420 Brassica carinata HOM05D002078 ORTHO05D005680 2.4e-09 67.8 146 28.8
BcaC09g50043 Brassica carinata HOM05D002078 ORTHO05D005680 2.4e-09 67.8 135 27.4
A06p23500 Brassica napus HOM05D008596 ORTHO05D003268 2.4e-09 67.8 103 32.0
BcaC05g27328 Brassica carinata HOM05D002078 ORTHO05D005680 3.2e-09 67.4 129 27.1
BcaC02g10131 Brassica carinata HOM05D002078 ORTHO05D005680 4.1e-09 67.0 161 27.3
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 5.4e-09 66.6 144 25.0
BcaC09g49433 Brassica carinata HOM05D002078 ORTHO05D005680 5.4e-09 66.6 145 26.9
Sp5g17660 Schrenkiella parvula HOM05D010529 ORTHO05D012528 5.4e-09 66.6 129 26.4
CARHR259430 Cardamine hirsuta HOM05D010629 ORTHO05D005680 7.1e-09 66.2 72 37.5
BcaC08g42839 Brassica carinata HOM05D002078 ORTHO05D005680 9.2e-09 65.9 129 29.5
BcaC08g44035 Brassica carinata HOM05D002078 ORTHO05D005680 9.2e-09 65.9 190 25.8
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 9.2e-09 65.9 131 28.2
BcaC01g01023 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-08 65.5 142 28.2
BcaC02g09312 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-08 65.5 146 26.7
BcaC03g14208 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-08 65.5 121 29.8
BcaC03g16104 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-08 65.5 130 30.0
BcaC05g26571 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-08 65.5 187 25.7
BcaC09g49293 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-08 65.5 135 28.9
Sp6g10630 Schrenkiella parvula HOM05D010529 ORTHO05D012528 1.2e-08 65.5 114 31.6
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.6e-08 65.1 168 27.4
BcaC03g17328 Brassica carinata HOM05D002078 ORTHO05D005680 2.1e-08 64.7 129 28.7
A01p26540 Brassica napus HOM05D003421 ORTHO05D003268 2.1e-08 64.7 126 26.2
BcaB03g15586 Brassica carinata HOM05D002078 ORTHO05D005680 2.7e-08 64.3 146 28.1
AUR62022261 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.7e-08 64.3 131 30.5
AUR62036395 Chenopodium quinoa HOM05D007445 ORTHO05D009408 2.7e-08 64.3 130 28.5
BcaC05g27300 Brassica carinata HOM05D002078 ORTHO05D005680 3.5e-08 63.9 123 29.3
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 3.5e-08 63.9 287 23.3
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 4.6e-08 63.5 149 22.8
BolC4t23765H Brassica oleracea HOM05D003421 ORTHO05D003268 4.6e-08 63.5 153 23.5
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 6.0e-08 63.2 154 22.7
BcaC04g20964 Brassica carinata HOM05D003421 ORTHO05D003268 6.0e-08 63.2 186 24.2
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.0e-07 62.4 133 24.8
BcaB03g14738 Brassica carinata HOM05D002078 ORTHO05D005680 1.0e-07 62.4 217 27.2
BolC2t09439H Brassica oleracea HOM05D003421 ORTHO05D003268 1.0e-07 62.4 183 24.0
BcaC04g20801 Brassica carinata HOM05D002078 ORTHO05D005680 1.3e-07 62.0 135 27.4
AUR62014731 Chenopodium quinoa HOM05D007445 ORTHO05D009408 1.7e-07 61.6 130 28.5
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 2.3e-07 61.2 284 23.6
Sp6g11050 Schrenkiella parvula HOM05D010529 ORTHO05D012528 2.3e-07 61.2 143 27.3
A03p66670 Brassica napus HOM05D008596 ORTHO05D003268 3.0e-07 60.8 148 25.7
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 3.9e-07 60.5 145 25.5
A03p68840 Brassica napus HOM05D008596 ORTHO05D003268 8.6e-07 59.3 90 30.0
BraSC39t46179Z Brassica rapa HOM05D008596 ORTHO05D003268 8.6e-07 59.3 90 30.0
AUR62017205 Chenopodium quinoa HOM05D007445 ORTHO05D009408 8.6e-07 59.3 139 27.3
BcaC01g04916 Brassica carinata HOM05D009676 ORTHO05D014479 1.1e-06 58.9 169 24.9
BcaC04g19675 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-06 58.9 183 24.6
BcaC07g37412 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-06 58.9 145 27.6
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 1.9e-06 58.2 262 24.4
HanXRQChr16g0522731 Helianthus annuus HOM05D008616 ORTHO05D003839 1.9e-06 58.2 224 21.9
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 2.5e-06 57.8 154 23.4
AUR62041161 Chenopodium quinoa HOM05D007445 ORTHO05D009408 3.3e-06 57.4 160 22.5
AUR62014080 Chenopodium quinoa HOM05D007445 ORTHO05D009408 4.3e-06 57.0 130 26.2
AUR62014319 Chenopodium quinoa HOM05D007445 ORTHO05D009408 5.6e-06 56.6 124 26.6
BcaC03g15357 Brassica carinata HOM05D002078 ORTHO05D005680 7.3e-06 56.2 89 37.1
A05p23070 Brassica napus HOM05D008596 ORTHO05D003268 7.3e-06 56.2 131 26.7
BcaC05g27779 Brassica carinata HOM05D002078 ORTHO05D005680 9.6e-06 55.8 101 32.7


User provided reference genes

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