Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2604 Capsella rubella HOM05D006836 ORTHO05D008691 1.1e-189 666.4 324 100.0
CARHR102220 Cardamine hirsuta HOM05D006836 ORTHO05D008691 8.1e-164 580.5 329 86.9
AL3G42030 Arabidopsis lyrata HOM05D006836 ORTHO05D008691 2.5e-157 558.9 331 86.4
Sp3g23200 Schrenkiella parvula HOM05D006836 ORTHO05D008691 8.4e-153 543.9 333 81.4
BcaB06g26781 Brassica carinata HOM05D006836 ORTHO05D008691 3.9e-150 535.0 331 78.5
Thhalv10002607m.g Eutrema salsugineum HOM05D006836 ORTHO05D008691 1.3e-148 530.0 331 80.1
BcaC06g35865 Brassica carinata HOM05D006836 ORTHO05D008691 5.3e-147 524.6 333 78.4
BolC7t41479H Brassica oleracea HOM05D006836 ORTHO05D008691 5.3e-147 524.6 333 78.4
C07p10290 Brassica napus HOM05D006836 ORTHO05D008691 9.0e-147 523.9 333 78.4
BraA07t28465Z Brassica rapa HOM05D006836 ORTHO05D008691 7.6e-146 520.8 333 77.2
A07p06710 Brassica napus HOM05D006836 ORTHO05D008691 2.2e-145 519.2 326 77.6
AT2G04360 Arabidopsis thaliana HOM05D006836 ORTHO05D008691 1.1e-123 447.2 267 84.3
THA.LOC104808842 Tarenaya hassleriana HOM05D006836 ORTHO05D008691 7.2e-120 434.5 341 65.1
Gohir.A07G192900 Gossypium hirsutum HOM05D006836 ORTHO05D008691 1.2e-111 407.1 337 60.5
Gorai.001G223100 Gossypium raimondii HOM05D006836 ORTHO05D008691 8.8e-110 401.0 337 59.3
Thecc.01G198300 Theobroma cacao HOM05D006836 ORTHO05D008691 1.5e-109 400.2 335 60.6
Gohir.D07G199300 Gossypium hirsutum HOM05D006836 ORTHO05D008691 2.6e-109 399.4 337 59.1
Manes.13G060700 Manihot esculenta HOM05D006836 ORTHO05D008691 7.5e-109 397.9 337 59.1
GSVIVG01030118001 Vitis vinifera HOM05D006836 ORTHO05D008691 6.3e-108 394.8 338 58.6
CiPaw.03G283000 Carya illinoinensis HOM05D006836 ORTHO05D008691 1.2e-106 390.6 342 57.0
Duzib133G0147 Durio zibethinus HOM05D006836 ORTHO05D008691 1.2e-106 390.6 335 59.4
CANSAT64G2876 Cannabis sativa HOM05D006836 ORTHO05D008691 1.0e-105 387.5 348 58.3
Dinv21313 Davidia involucrata HOM05D006836 ORTHO05D008691 2.5e-104 382.9 340 57.1
QL04p067653 Quercus lobata HOM05D006836 ORTHO05D008691 2.5e-104 382.9 343 56.9
Lalb_Chr10g0094621 Lupinus albus HOM05D006836 ORTHO05D008691 5.5e-104 381.7 324 58.6
Rhsim06G0178100 Rhododendron simsii HOM05D006836 ORTHO05D008691 5.5e-104 381.7 347 56.8
RcHm_v2.0_Chr2g0155731 Rosa chinensis HOM05D006836 ORTHO05D008691 7.2e-104 381.3 340 56.5
Actinidia09801 Actinidia chinensis HOM05D006836 ORTHO05D008691 9.4e-104 380.9 339 56.6
DCAR_012739 Daucus carota HOM05D006836 ORTHO05D008691 1.6e-103 380.2 335 56.4
Cfa014210 Carpinus fangiana HOM05D006836 ORTHO05D008691 2.7e-103 379.4 365 55.1
Lj6g0007987 Lotus japonicus HOM05D006836 ORTHO05D008691 3.6e-103 379.0 338 58.0
Ciclev10015848m.g Citrus clementina HOM05D006836 ORTHO05D008691 8.0e-103 377.9 338 56.5
TPR.G16170 Trifolium pratense HOM05D006836 ORTHO05D008691 8.8e-102 374.4 325 58.2
vmacro12068 Vaccinium macrocarpon HOM05D006836 ORTHO05D008691 2.6e-101 372.9 339 54.6
CSS0020520 Camellia sinensis var. sinensis HOM05D006836 ORTHO05D008691 9.8e-101 370.9 349 55.0
Potri.014G169200 Populus trichocarpa HOM05D006836 ORTHO05D008691 2.2e-100 369.8 328 58.5
arahy.Tifrunner.gnm1.ann1.GSTV0Y Arachis hypogaea HOM05D006836 ORTHO05D008691 8.3e-100 367.9 343 54.8
Ca_16339_v3 Cicer arietinum L. HOM05D006836 ORTHO05D008691 8.3e-100 367.9 327 56.3
MD09G1129600 Malus domestica HOM05D006836 ORTHO05D008691 1.1e-99 367.5 333 54.7
TAR629G0496 Trochodendron aralioides HOM05D006836 ORTHO05D008691 2.4e-99 366.3 345 53.6
Eucgr.K01397 Eucalyptus grandis HOM05D006836 ORTHO05D008691 3.1e-99 365.9 264 64.4
MBI14_g24036_MAGBIO Magnolia biondii HOM05D006836 ORTHO05D008691 4.1e-99 365.5 331 55.6
arahy.Tifrunner.gnm1.ann1.M09JG2 Arachis hypogaea HOM05D006836 ORTHO05D008691 7.0e-99 364.8 343 55.1
PGR031G1777 Punica granatum HOM05D006836 ORTHO05D008691 9.1e-99 364.4 338 55.0
VMungo0647G0281 Vigna mungo HOM05D006836 ORTHO05D008691 9.1e-99 364.4 271 64.2
Phvul.L001691 Phaseolus vulgaris HOM05D006836 ORTHO05D008691 1.2e-98 364.0 308 59.1
TWI75G1319 Tripterygium wilfordii HOM05D006836 ORTHO05D008691 1.2e-98 364.0 318 57.2
Solyc07g045300.4 Solanum lycopersicum HOM05D006836 ORTHO05D008691 3.5e-98 362.5 341 53.4
Nitab4.5_0004852g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 7.7e-98 361.3 344 53.5
Haze_12601 Corylus avellana HOM05D006836 ORTHO05D008691 1.7e-97 360.1 395 51.1
ClCG02G009110 Citrullus lanatus HOM05D006836 ORTHO05D008691 2.9e-97 359.4 342 54.1
Hund15463 Selenicereus undatus HOM05D006836 ORTHO05D008691 2.9e-97 359.4 336 56.2
PSO541G5262 Papaver somniferum HOM05D006836 ORTHO05D008691 4.2e-96 355.5 337 54.0
Glyma.13G010200 Glycine max HOM05D006836 ORTHO05D008691 7.2e-96 354.8 279 60.9
Aqoxy1G03080 Aquilegia oxysepala HOM05D006836 ORTHO05D008691 1.2e-95 354.0 257 63.0
Sopen07g023830 Solanum pennellii HOM05D006836 ORTHO05D008691 1.2e-95 354.0 235 67.7
Sed0023251 Sechium edule HOM05D006836 ORTHO05D008691 1.6e-95 353.6 238 67.6
PSO675G1370 Papaver somniferum HOM05D006836 ORTHO05D008691 2.1e-95 353.2 353 52.1
Psat5g104760 Pisum sativum HOM05D006836 ORTHO05D008691 3.6e-95 352.4 315 56.2
Nn1g07540 Nelumbo nucifera HOM05D006836 ORTHO05D008691 6.1e-95 351.7 344 53.2
PGSC0003DMG400017381 Solanum tuberosum HOM05D006836 ORTHO05D008691 1.0e-94 350.9 235 67.2
Glyma.20G060000 Glycine max HOM05D006836 ORTHO05D008691 3.4e-93 345.9 265 62.3
Oeu037218.2 Olea europaea HOM05D000879 ORTHO05D008691 7.5e-93 344.7 235 65.5
SGA_v2.0_scaffold73G24492 Striga asiatica HOM05D006836 ORTHO05D008691 8.3e-92 341.3 349 50.4
COL.COLO4_19642 Corchorus olitorius HOM05D006836 ORTHO05D008691 1.1e-91 340.9 338 54.1
Aa31sc202G50 Aethionema arabicum HOM05D006836 ORTHO05D008691 1.4e-91 340.5 286 63.3
MSTRG.14912 Avicennia marina HOM05D006836 ORTHO05D008691 1.8e-91 340.1 348 50.6
Migut.M00056 Erythranthe guttata HOM05D006836 ORTHO05D008691 2.4e-91 339.7 353 53.0
Medtr3g082680 Medicago truncatula HOM05D006836 ORTHO05D008691 3.2e-91 339.3 230 67.4
AUR62014994 Chenopodium quinoa HOM05D006836 ORTHO05D008691 1.0e-89 334.3 331 53.8
Os08g0345400 Oryza sativa ssp. japonica HOM05D006836 ORTHO05D008691 1.3e-89 334.0 233 64.4
Zm00001eb176810 Zea mays HOM05D006836 ORTHO05D008691 3.9e-89 332.4 287 55.4
Sabra14G0129000 Salix brachista HOM05D006836 ORTHO05D008691 1.1e-88 330.9 415 45.3
EL10Ac9g22661 Beta vulgaris HOM05D006836 ORTHO05D008691 3.3e-88 329.3 338 51.5
SEGI_40154 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 3.3e-88 329.3 294 53.4
FvH4_6g40480 Fragaria vesca HOM05D006836 ORTHO05D008691 6.1e-87 325.1 298 55.0
Nitab4.5_0005354g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 6.8e-86 321.6 343 50.7
Ah.01g002500 Amaranthus hybridus HOM05D006836 ORTHO05D008691 8.9e-86 321.2 336 52.1
FAN10G4054 Fragaria x ananassa HOM05D006836 ORTHO05D008691 1.5e-85 320.5 362 48.3
FAN14G0130 Fragaria x ananassa HOM05D006836 ORTHO05D008691 1.5e-85 320.5 362 48.3
ATR0751G245 Amborella trichopoda HOM05D006836 ORTHO05D008691 3.7e-84 315.8 220 65.0
AUR62029127 Chenopodium quinoa HOM05D006836 ORTHO05D008691 7.8e-82 308.1 220 65.0
Cc00_g01020 Coffea canephora HOM05D006836 ORTHO05D008691 7.8e-82 308.1 366 45.6
Lsat_1_v5_gn_7_97361 Lactuca sativa HOM05D006836 ORTHO05D008691 3.9e-81 305.8 337 45.7
Lj8A137G50 Lonicera japonica HOM05D006836 ORTHO05D008691 3.3e-80 302.8 205 68.8
Peaxi162Scf00612g00142 Petunia axillaris HOM05D006836 ORTHO05D008691 1.8e-78 297.0 351 46.4
HanXRQChr11g0329431 Helianthus annuus HOM05D006836 ORTHO05D008691 5.8e-77 292.0 329 46.8
CsaV3_6G009720 Cucumis sativus L. HOM05D006836 ORTHO05D008691 2.2e-76 290.0 216 61.6
unitig_62.g23534 Utricularia gibba HOM05D000211 ORTHO05D002682 1.3e-73 280.8 318 47.5
Pp3c23_16310 Physcomitrium patens HOM05D006836 ORTHO05D008691 4.3e-72 275.8 234 53.8
CDE10G1136 Ceratophyllum demersum HOM05D006836 ORTHO05D008691 1.2e-71 274.2 174 72.4
ECA236G0162 Erigeron canadensis HOM05D006836 ORTHO05D008691 1.6e-71 273.9 214 59.8
Cpa.g.sc136.39 Carica papaya HOM05D006836 ORTHO05D008691 1.1e-70 271.2 341 45.5
Sc21g0000470 Simmondsia chinensis HOM05D006836 ORTHO05D008691 1.2e-66 257.7 262 51.9
MELO3C025942.2 Cucumis melo HOM05D006836 ORTHO05D008691 2.7e-66 256.5 278 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1494 Anthoceros agrestis HOM05D006836 ORTHO05D008691 3.5e-66 256.1 229 53.3
Mapoly0098s0007 Marchantia polymorpha HOM05D006836 ORTHO05D008691 2.3e-65 253.4 221 55.2
SMO270G0068 Selaginella moellendorffii HOM05D006836 ORTHO05D008691 2.8e-63 246.5 224 50.0
Prupe.3G195700 Prunus persica HOM05D006836 ORTHO05D008691 4.0e-62 242.7 244 52.9
FAN02G3194 Fragaria x ananassa HOM05D006836 ORTHO05D008691 2.1e-58 230.3 244 50.4
MD17G1118400 Malus domestica HOM05D006836 ORTHO05D008691 2.3e-57 226.9 229 50.2
Haze_12612 Corylus avellana HOM05D006836 ORTHO05D008691 8.7e-57 224.9 260 49.6
MD07G1016400 Malus domestica HOM05D006836 ORTHO05D008691 8.7e-57 224.9 225 50.7
Cre05.g234750 Chlamydomonas reinhardtii HOM05D006836 ORTHO05D008691 6.6e-49 198.7 252 42.5
CBR_g3513 Chara braunii HOM05D006836 ORTHO05D000407 1.4e-38 164.5 217 40.1
FAN05G5431 Fragaria x ananassa HOM05D006836 ORTHO05D008691 1.4e-35 154.5 109 66.1
FAN09G0369 Fragaria x ananassa HOM05D006836 ORTHO05D008691 5.5e-35 152.5 109 66.1
SEGI_21977 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 2.1e-31 140.6 148 48.6
HPP92_003030 Vanilla planifolia HOM05D006836 ORTHO05D008691 4.8e-31 139.4 96 63.5
HPP92_003031 Vanilla planifolia HOM05D006836 ORTHO05D008691 3.8e-28 129.8 86 66.3
PRCOL_00003549 Prasinoderma coloniale HOM05D006836 ORTHO05D008691 7.7e-21 105.5 167 40.1
arahy.Tifrunner.gnm1.ann1.FY93PX Arachis hypogaea HOM05D006836 ORTHO05D000230 8.5e-12 75.5 43 74.4
MCO08G347 Micromonas commoda HOM05D006836 ORTHO05D008691 8.5e-12 75.5 218 29.8
Haze_12595 Corylus avellana HOM05D006836 ORTHO05D008691 3.2e-11 73.6 48 66.7
Hma1.2p1_0599F.1_g187040 Hydrangea macrophylla HOM05D006836 ORTHO05D008691 8.2e-07 58.9 132 31.8


User provided reference genes

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