Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 6.7e-265 916.8 455 100.0
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 2.2e-252 875.2 455 95.4
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 3.2e-251 871.3 453 95.6
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 3.4e-240 834.7 456 92.5
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 7.5e-240 833.6 455 91.9
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 9.8e-240 833.2 455 92.7
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 1.8e-238 828.9 454 92.7
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 4.1e-238 827.8 454 92.5
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 7.0e-238 827.0 454 92.5
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.2e-237 826.2 454 92.3
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.2e-237 826.2 454 92.3
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 5.9e-237 823.9 454 91.4
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.0e-229 798.9 456 87.5
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 3.5e-229 798.1 455 88.8
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.2e-224 783.1 457 86.4
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.0e-204 716.8 449 79.1
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 2.3e-204 715.7 452 79.0
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 4.3e-203 711.4 455 78.2
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 7.3e-203 710.7 454 77.5
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 9.5e-203 710.3 447 79.4
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.6e-202 709.5 454 77.5
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.6e-202 709.5 447 79.9
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.8e-202 708.8 454 77.5
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 8.1e-202 707.2 454 77.3
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.1e-201 706.8 449 78.6
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.4e-201 706.4 454 77.5
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.3e-201 705.7 449 78.6
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.1e-201 705.3 456 77.6
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 8.9e-201 703.7 455 77.1
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 8.9e-201 703.7 451 78.3
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 4.4e-200 701.4 448 78.1
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 7.6e-200 700.7 456 77.4
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 9.9e-200 700.3 449 78.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 2.2e-199 699.1 447 77.6
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 4.9e-199 698.0 425 80.7
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 8.4e-199 697.2 448 78.1
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.4e-198 696.4 447 77.4
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 2.1e-197 692.6 448 77.2
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 2.1e-197 692.6 425 79.1
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 3.5e-197 691.8 445 77.1
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 7.8e-197 690.6 426 79.6
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.0e-196 690.3 450 76.0
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 1.7e-196 689.5 447 76.3
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.0e-196 688.7 427 78.9
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 6.6e-196 687.6 457 76.4
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.1e-195 686.8 427 78.7
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.9e-195 686.0 436 77.3
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 7.3e-195 684.1 427 78.7
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 1.2e-194 683.3 446 78.5
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 1.6e-194 682.9 425 78.1
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.8e-194 682.2 455 75.8
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.8e-194 682.2 442 76.2
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 8.1e-194 680.6 427 77.5
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 4.0e-193 678.3 448 75.2
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 5.2e-193 677.9 448 76.1
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 9.0e-193 677.2 459 74.5
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.4e-192 675.2 419 78.8
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 3.4e-192 675.2 423 77.5
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 7.6e-192 674.1 423 78.5
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 9.9e-192 673.7 423 78.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.7e-191 672.9 454 75.1
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 2.4e-190 669.1 448 75.0
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.6e-189 666.4 456 72.1
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.1e-189 666.0 421 78.6
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 2.1e-189 666.0 422 79.1
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 6.0e-189 664.5 456 72.6
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 6.0e-189 664.5 450 75.3
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 7.8e-189 664.1 451 74.3
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.0e-188 663.7 425 76.5
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.0e-188 663.7 425 76.5
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.7e-188 662.9 426 77.0
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 1.7e-188 662.9 448 75.2
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 2.3e-188 662.5 425 76.9
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 5.1e-188 661.4 457 73.1
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.3e-187 658.3 440 74.1
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.3e-187 658.3 440 73.6
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.8e-186 655.6 433 74.8
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 8.1e-186 654.1 440 74.5
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 8.1e-186 654.1 456 71.9
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 1.1e-185 653.7 434 75.6
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.4e-185 653.3 456 71.5
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.8e-185 652.9 443 74.0
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.8e-185 652.9 419 77.1
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.1e-185 652.1 418 75.8
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.9e-185 651.0 461 72.0
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.2e-184 650.2 444 73.6
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.5e-184 648.3 447 71.6
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 9.9e-184 647.1 433 75.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 9.9e-184 647.1 433 76.0
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 2.9e-183 645.6 429 75.5
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 2.9e-183 645.6 444 73.2
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 6.4e-183 644.4 450 71.8
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 2.4e-182 642.5 445 72.4
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.2e-181 640.2 446 72.9
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 2.7e-181 639.0 433 73.0
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 7.9e-181 637.5 454 70.9
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 5.1e-180 634.8 457 70.9
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 5.6e-179 631.3 419 74.2
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 7.4e-179 630.9 457 69.4
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 2.1e-178 629.4 419 72.6
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 2.1e-178 629.4 572 61.0
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 4.8e-178 628.2 454 69.6
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 5.3e-177 624.8 418 71.8
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 8.4e-175 617.5 429 69.7
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.6e-173 613.2 393 78.6
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.6e-173 613.2 429 69.5
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.6e-173 613.2 445 68.8
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 3.9e-172 608.6 473 66.6
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.7e-172 607.8 448 69.0
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.3e-171 605.5 447 69.4
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-169 600.5 363 79.9
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 2.2e-167 592.8 451 65.4
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.4e-166 590.1 465 65.4
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.4e-166 590.1 421 69.6
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 7.9e-165 584.3 456 66.7
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 1.5e-163 580.1 425 68.9
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 9.7e-163 577.4 430 68.4
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.0e-159 567.4 422 65.2
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.2e-158 561.2 454 63.2
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.1e-153 547.4 366 74.9
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.8e-148 530.0 304 84.9
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 5.1e-148 528.5 395 69.1
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 2.2e-146 523.1 363 71.1
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 8.2e-146 521.2 426 61.3
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 1.1e-139 500.7 332 72.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 3.7e-138 495.7 420 60.5
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.1e-134 484.2 416 59.4
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 5.5e-134 481.9 335 69.9
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.1e-133 479.9 441 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 3.6e-133 479.2 464 55.2
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 5.7e-131 471.9 438 55.5
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.3e-127 460.7 324 71.3
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.2e-120 437.6 394 59.6
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 9.2e-105 384.8 336 60.1
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 4.4e-99 365.9 294 63.3
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 2.1e-88 330.5 209 78.0
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 2.1e-88 330.5 255 63.9
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.7e-87 327.4 255 65.5
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.6e-85 320.9 208 78.4
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 4.2e-81 306.2 428 43.7
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 6.4e-74 282.3 197 71.1
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 2.9e-66 256.9 178 73.6
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 6.9e-52 209.1 166 68.1
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 5.1e-47 193.0 136 72.8
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 7.7e-43 179.1 152 60.5
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 1.2e-40 171.8 151 61.6
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 1.0e-39 168.7 222 47.7
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 3.9e-23 113.6 61 93.4
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 4.1e-12 77.0 56 64.3


User provided reference genes

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