Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 0.0e+00 2142.1 1368 100.0
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 0.0e+00 1605.5 1374 72.5
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 0.0e+00 1594.7 1376 73.1
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 0.0e+00 1394.0 1376 59.4
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 0.0e+00 1293.9 1374 56.8
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 1291.2 1374 56.3
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 1268.4 1378 55.5
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 0.0e+00 1268.4 1378 55.5
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 1255.4 1379 55.5
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 1248.8 1373 55.2
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 0.0e+00 1202.2 1374 54.1
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 0.0e+00 1160.2 1389 52.3
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 1.8e-244 850.5 1489 41.4
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 6.8e-119 433.3 1440 30.1
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 6.1e-112 410.2 1537 28.9
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 1.8e-108 398.7 1441 28.5
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 3.2e-108 397.9 1435 28.3
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 8.0e-104 383.3 1435 27.3
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 8.9e-103 379.8 1414 27.7
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.5e-102 379.0 1421 28.2
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 8.6e-98 363.2 1481 29.3
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 1.6e-96 359.0 1489 29.9
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 9.8e-94 349.7 1441 26.7
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 9.8e-94 349.7 1422 27.1
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 7.3e-89 333.6 1415 27.1
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 1.2e-88 332.8 1532 26.9
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 5.8e-86 323.9 1428 27.5
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.7e-85 322.4 1433 26.7
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.7e-85 322.4 1405 27.0
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 2.2e-85 322.0 1448 26.0
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.6e-83 315.8 1385 26.6
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 2.7e-83 315.1 1443 28.0
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 4.6e-83 314.3 1409 27.1
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 5.1e-82 310.8 1403 26.1
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 2.0e-78 298.9 1456 28.8
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 3.8e-77 294.7 1413 26.3
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 3.8e-77 294.7 1488 26.1
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 2.4e-76 292.0 1452 27.9
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 3.2e-76 291.6 1405 26.4
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.1e-75 288.9 447 39.4
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 1.0e-74 286.6 1388 24.9
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.5e-73 282.7 1417 25.7
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 1.5e-73 282.7 1446 28.8
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 3.3e-73 281.6 1363 24.9
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 9.6e-73 280.0 1363 24.9
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.1e-71 276.6 1436 26.3
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 3.1e-71 275.0 1425 25.9
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 5.3e-71 274.2 1415 25.9
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 1.2e-70 273.1 1404 25.0
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 3.4e-70 271.6 1434 27.2
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 5.8e-70 270.8 1440 27.6
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 3.8e-69 268.1 1407 25.1
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 4.6e-67 261.2 1542 25.0
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 2.3e-66 258.8 1477 25.0
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 3.9e-66 258.1 1441 25.1
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.5e-65 256.1 1237 26.1
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 1.9e-65 255.8 1382 25.3
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 7.3e-65 253.8 405 38.8
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 8.1e-64 250.4 1423 24.4
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 9.0e-63 246.9 1429 24.5
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 1.5e-62 246.1 517 34.6
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 2.9e-61 241.9 457 36.1
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.9e-61 241.1 483 36.0
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 4.9e-61 241.1 1274 24.6
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 7.1e-60 237.3 1442 25.0
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.6e-59 234.6 1429 25.0
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.6e-59 234.6 1429 25.0
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 1.8e-58 232.6 1394 24.1
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 3.0e-58 231.9 1402 24.1
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.9e-57 229.2 1401 23.9
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 2.5e-57 228.8 1453 23.5
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.6e-56 226.1 408 36.3
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 2.1e-56 225.7 1382 24.0
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.1e-55 223.4 348 39.4
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 9.0e-55 220.3 1434 25.9
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 1.2e-54 219.9 1542 24.7
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 2.0e-54 219.2 460 33.0
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 5.8e-54 217.6 1425 23.8
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 3.8e-53 214.9 1417 23.2
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 3.8e-53 214.9 1296 25.2
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 4.6e-51 208.0 1386 23.6
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 6.0e-51 207.6 256 49.6
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 1.3e-50 206.5 408 34.8
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 1.3e-50 206.5 1371 23.4
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.9e-50 204.9 475 30.9
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 5.7e-49 201.1 1424 23.4
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 2.1e-48 199.1 402 32.8
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.2e-46 193.4 415 33.5
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 1.0e-45 190.3 493 32.0
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 1.7e-45 189.5 483 30.8
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 1.1e-44 186.8 1419 22.7
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.1e-43 182.6 451 33.5
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 7.9e-43 180.6 1590 21.4
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 1.5e-41 176.4 311 37.0
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 8.2e-40 170.6 1437 22.7
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.8e-39 169.5 408 31.4
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 1.8e-39 169.5 1481 22.8
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 5.9e-38 164.5 257 46.7
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 1.0e-37 163.7 1388 21.9
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.9e-37 162.2 713 25.2
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 5.0e-37 161.4 402 29.4
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.5e-36 159.1 333 36.9
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 2.5e-36 159.1 308 32.5
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 4.2e-36 158.3 267 34.1
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 5.5e-36 157.9 279 37.6
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.6e-35 155.2 1471 21.0
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 5.1e-34 151.4 1459 21.0
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 1.7e-29 136.3 1440 20.6
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.2e-28 131.7 354 29.9
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 9.4e-28 130.6 135 56.3
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 9.4e-28 130.6 135 56.3
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 1.6e-27 129.8 297 36.4
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.0e-26 127.1 292 36.3
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 1.4e-26 126.7 1382 21.3
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 3.9e-26 125.2 407 27.3
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 5.7e-25 121.3 277 35.0
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 2.2e-24 119.4 289 35.3
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 3.7e-24 118.6 402 29.9
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 1.9e-20 106.3 141 41.8
A03p44260 Brassica napus HOM05D005171 ORTHO05D041371 2.0e-17 96.3 87 57.5
BraA03t13556Z Brassica rapa HOM05D005171 ORTHO05D041371 2.0e-17 96.3 87 57.5
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.3e-17 95.5 133 51.9
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 1.3e-16 93.6 125 38.4
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.4e-15 90.1 133 47.4
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 1.8e-15 89.7 127 40.9
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 6.5e-13 81.3 143 35.7
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 1.1e-12 80.5 263 32.7
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 2.1e-11 76.3 133 31.6
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 8.0e-11 74.3 87 41.4
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 1.8e-10 73.2 117 41.0
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 7.5e-09 67.8 116 43.1
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 9.8e-09 67.4 92 42.4
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.7e-08 66.6 121 34.7
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.8e-07 63.2 108 35.2
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 9.1e-07 60.8 124 37.9


User provided reference genes

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