Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 6.2e-177 624.4 407 100.0
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.7e-134 483.4 413 78.9
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 6.4e-134 481.5 414 80.2
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 2.2e-121 439.9 414 72.0
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 9.1e-112 407.9 421 64.1
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 7.7e-111 404.8 422 65.6
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 7.7e-111 404.8 422 65.6
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 7.7e-111 404.8 422 65.6
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 2.2e-110 403.3 421 64.4
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 7.5e-90 335.1 361 69.8
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 7.7e-87 325.1 317 73.8
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 5.9e-71 272.3 417 49.2
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 5.6e-69 265.8 444 57.4
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 8.4e-41 172.2 423 35.7
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 2.4e-40 170.6 392 41.3
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 3.2e-40 170.2 412 38.6
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 3.2e-40 170.2 471 38.2
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 4.2e-40 169.9 410 34.6
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 4.2e-40 169.9 459 42.3
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 2.7e-39 167.2 405 35.8
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 3.5e-39 166.8 424 35.8
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 6.0e-39 166.0 457 37.2
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 1.3e-36 158.3 421 37.8
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.3e-36 158.3 426 35.4
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.2e-34 151.8 442 36.9
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.4e-34 150.2 426 42.5
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 4.4e-34 149.8 440 35.9
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 2.9e-33 147.1 407 36.6
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.9e-33 147.1 446 37.9
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 2.9e-33 147.1 432 34.0
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.1e-32 145.2 451 37.7
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 1.1e-32 145.2 434 37.3
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.4e-32 144.8 411 42.3
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.9e-32 144.4 439 36.0
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 7.1e-32 142.5 433 45.0
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.2e-31 141.7 436 35.8
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.6e-31 141.4 467 35.8
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.7e-31 140.6 441 33.6
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 4.6e-31 139.8 407 42.8
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 6.0e-31 139.4 421 37.5
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 6.6e-30 136.0 412 38.3
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 8.7e-30 135.6 423 35.0
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.1e-29 135.2 461 31.5
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.9e-29 134.4 479 34.7
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 3.3e-29 133.7 444 37.4
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 7.3e-29 132.5 429 38.5
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 9.6e-29 132.1 454 35.7
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 9.6e-29 132.1 408 32.8
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.1e-28 131.0 382 30.6
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.8e-28 130.6 434 39.9
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 6.2e-28 129.4 139 63.3
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 8.1e-28 129.0 398 42.7
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.1e-27 128.6 457 35.4
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.1e-27 128.6 457 35.4
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 2.4e-27 127.5 133 64.7
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 6.9e-27 125.9 416 39.7
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 6.9e-27 125.9 393 45.5
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 9.0e-27 125.6 385 44.4
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.2e-26 125.2 384 32.3
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.2e-26 125.2 422 36.0
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.5e-26 124.8 260 40.0
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.4e-26 123.6 436 38.5
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 4.5e-26 123.2 132 54.5
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 5.8e-26 122.9 418 39.7
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.8e-26 122.9 422 37.9
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 9.9e-26 122.1 435 33.1
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.7e-25 121.3 385 35.6
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 1.7e-25 121.3 391 36.3
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.9e-25 120.6 387 32.6
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 4.9e-25 119.8 476 32.4
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 6.4e-25 119.4 418 42.3
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 6.4e-25 119.4 418 42.3
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 8.4e-25 119.0 172 52.9
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.9e-24 117.9 137 52.6
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 2.4e-24 117.5 124 56.5
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 2.4e-24 117.5 141 47.5
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 2.4e-24 117.5 508 32.1
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 4.2e-24 116.7 420 41.7
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 5.4e-24 116.3 407 34.6
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 9.3e-24 115.5 137 64.2
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 9.3e-24 115.5 411 37.2
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.2e-23 115.2 140 46.4
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.6e-23 114.8 418 38.8
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 1.6e-23 114.8 385 34.3
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 2.1e-23 114.4 388 36.3
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 2.1e-23 114.4 238 39.9
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 7.9e-23 112.5 389 35.7
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.0e-22 112.1 136 66.2
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 1.3e-22 111.7 136 66.9
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.3e-22 111.7 136 66.9
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.3e-22 111.7 136 65.4
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.8e-22 111.3 201 52.7
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 1.8e-22 111.3 391 35.0
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 3.9e-22 110.2 122 73.8
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 5.1e-22 109.8 259 36.7
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 8.7e-22 109.0 418 40.4
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.9e-21 107.8 395 31.6
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.3e-21 107.1 418 35.9
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 4.3e-21 106.7 138 63.8
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 7.4e-21 105.9 176 48.3
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.3e-20 105.1 130 44.6
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 3.7e-20 103.6 138 58.0
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 6.2e-20 102.8 272 36.8
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.1e-19 102.1 416 32.9
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.1e-19 102.1 120 45.8
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.4e-19 101.7 122 63.9
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.1e-19 100.5 267 44.9
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 4.0e-19 100.1 142 62.7
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 9.0e-19 99.0 431 32.7
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.9e-17 93.2 128 40.6
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 1.4e-16 91.7 428 32.0
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 2.5e-16 90.9 284 37.7
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.2e-16 90.5 128 39.8
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 6.0e-15 86.3 199 39.2
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 1.0e-14 85.5 398 31.7
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 1.8e-14 84.7 158 38.0
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 1.5e-13 81.6 368 27.7
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.3e-13 80.5 129 45.0
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 5.7e-13 79.7 127 48.0
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 7.4e-13 79.3 129 39.5
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 2.8e-12 77.4 129 45.0
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 3.7e-12 77.0 131 36.6
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.1e-11 73.9 362 32.6
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 9.0e-11 72.4 133 41.4
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 4.5e-10 70.1 46 69.6
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 7.6e-10 69.3 127 42.5
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 6.5e-09 66.2 116 37.1
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 1.2e-07 62.0 137 59.9
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 2.1e-07 61.2 145 44.8
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 4.6e-07 60.1 268 38.1


User provided reference genes

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