Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 9.5e-104 380.2 192 100.0
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 3.3e-96 355.1 189 93.7
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 2.2e-92 342.4 189 91.0
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.5e-88 329.7 191 84.8
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 9.0e-78 293.9 192 77.6
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 2.2e-76 289.3 192 75.5
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 6.4e-76 287.7 192 75.5
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 1.6e-74 283.1 193 75.1
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 3.5e-74 282.0 193 74.6
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 3.5e-74 282.0 192 74.0
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 4.6e-74 281.6 192 74.0
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 3.3e-72 275.4 195 69.7
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 9.6e-72 273.9 195 70.8
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 3.2e-67 258.8 192 70.8
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 6.9e-62 241.1 192 66.1
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 2.0e-61 239.6 192 65.6
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 1.7e-60 236.5 192 65.6
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 2.9e-60 235.7 184 63.6
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 2.9e-60 235.7 188 62.2
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 2.9e-60 235.7 188 62.2
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 3.2e-59 232.3 180 65.0
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 3.7e-55 218.8 204 56.4
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 4.1e-54 215.3 164 62.8
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 3.8e-52 208.8 163 65.0
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.8e-52 208.8 193 61.1
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 8.5e-52 207.6 197 55.8
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 1.1e-51 207.2 170 61.8
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 2.5e-51 206.1 196 54.6
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 4.2e-51 205.3 169 64.5
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 7.2e-51 204.5 178 60.7
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 9.4e-51 204.1 195 56.4
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 1.6e-50 203.4 197 54.8
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 2.7e-50 202.6 177 58.2
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 3.6e-50 202.2 191 57.1
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 3.6e-50 202.2 173 58.4
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 6.1e-50 201.4 182 55.5
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 7.9e-50 201.1 198 56.1
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 7.9e-50 201.1 200 54.0
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 7.9e-50 201.1 186 56.5
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 1.0e-49 200.7 204 53.4
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 1.4e-49 200.3 184 56.0
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 1.8e-49 199.9 200 54.0
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 2.3e-49 199.5 192 55.2
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 3.9e-49 198.7 202 55.4
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 1.5e-48 196.8 164 59.8
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.6e-48 196.1 181 58.6
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 3.3e-48 195.7 188 54.8
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 4.4e-48 195.3 207 53.1
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 4.4e-48 195.3 181 58.0
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 5.7e-48 194.9 181 58.0
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 7.4e-48 194.5 170 59.4
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 9.7e-48 194.1 190 55.8
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 2.2e-47 193.0 175 56.0
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 2.2e-47 193.0 195 52.8
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 2.8e-47 192.6 204 51.5
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 3.7e-47 192.2 170 59.4
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 4.8e-47 191.8 170 57.1
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 1.4e-46 190.3 196 57.1
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.8e-46 189.9 176 57.4
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 2.4e-46 189.5 176 56.2
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 3.1e-46 189.1 185 53.0
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 3.1e-46 189.1 167 59.3
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 3.1e-46 189.1 167 59.9
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 5.3e-46 188.3 161 60.2
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 5.3e-46 188.3 202 52.5
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 5.3e-46 188.3 167 59.9
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 7.0e-46 188.0 165 57.0
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 1.2e-45 187.2 167 58.7
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 1.5e-45 186.8 204 51.0
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 2.0e-45 186.4 175 53.7
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 3.4e-45 185.7 178 52.8
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 3.4e-45 185.7 205 49.3
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 4.5e-45 185.3 207 52.2
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 5.9e-45 184.9 185 51.4
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 7.7e-45 184.5 206 49.5
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 7.7e-45 184.5 207 50.2
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 2.2e-44 183.0 207 51.2
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 3.8e-44 182.2 206 49.0
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 6.5e-44 181.4 173 54.3
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 6.5e-44 181.4 214 49.5
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 1.1e-43 180.6 154 61.0
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 1.1e-43 180.6 206 48.1
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 1.4e-43 180.3 165 56.4
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 1.4e-43 180.3 207 49.3
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 1.4e-43 180.3 180 51.7
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.9e-43 179.9 206 48.5
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 1.6e-42 176.8 224 46.4
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 3.9e-41 172.2 195 51.3
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 5.2e-41 171.8 188 48.9
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 1.5e-40 170.2 183 49.7
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 3.3e-40 169.1 157 57.3
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 9.7e-40 167.5 207 47.3
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 9.7e-40 167.5 183 48.1
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 1.7e-39 166.8 190 49.5
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 1.7e-39 166.8 198 48.5
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 3.7e-39 165.6 176 51.7
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 4.8e-39 165.2 197 46.7
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 4.8e-39 165.2 192 48.4
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 2.4e-38 162.9 178 49.4
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 5.3e-38 161.8 170 50.6
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 7.0e-38 161.4 157 52.2
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 5.9e-37 158.3 194 46.4
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 2.1e-34 149.8 154 51.3
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 2.1e-34 149.8 171 46.8
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 6.1e-34 148.3 177 45.2
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 1.7e-28 130.2 118 56.8
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 2.5e-27 126.3 181 41.4
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 7.2e-27 124.8 97 68.0
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 6.1e-26 121.7 127 52.0
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 7.7e-21 104.8 114 51.8
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.2e-18 97.4 171 35.1
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 5.2e-17 92.0 172 36.0
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 5.4e-14 82.0 203 32.0
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.6e-13 80.5 99 46.5
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 6.6e-12 75.1 110 40.0
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 4.4e-08 62.4 106 38.7


User provided reference genes

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