Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 0.0e+00 1154.0 603 100.0
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 0.0e+00 1087.0 603 94.4
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 0.0e+00 1080.9 603 94.0
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.9e-307 1058.5 603 92.4
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.8e-305 1052.0 604 91.2
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.5e-304 1048.9 603 89.9
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.5e-304 1048.9 603 89.9
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 3.3e-304 1047.7 603 91.4
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.4e-302 1041.6 603 90.9
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 1.9e-299 1031.9 603 90.7
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.9e-299 1031.9 604 90.2
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 4.0e-297 1024.2 604 89.4
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 4.0e-297 1024.2 604 89.4
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 4.0e-297 1024.2 604 89.4
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 6.7e-297 1023.5 608 87.7
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 8.2e-295 1016.5 604 86.9
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 4.1e-294 1014.2 604 86.9
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 6.8e-289 996.9 605 86.8
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.4e-286 989.2 610 85.4
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 4.3e-275 951.0 554 87.2
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.6e-275 950.7 554 90.4
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.2e-261 906.4 610 76.9
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 3.2e-254 881.7 603 76.8
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 6.0e-253 877.5 607 75.9
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.0e-252 876.7 605 75.7
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.0e-252 876.7 603 77.4
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-252 876.3 605 75.7
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 3.9e-252 874.8 607 76.9
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 5.1e-252 874.4 606 75.7
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 6.6e-252 874.0 595 77.0
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.1e-251 873.2 608 74.7
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.1e-251 873.2 608 76.2
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-251 873.2 609 75.5
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.1e-251 873.2 603 76.8
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.9e-251 872.5 603 75.6
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.9e-251 872.5 608 74.5
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 3.3e-251 871.7 603 75.5
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 3.3e-251 871.7 609 74.7
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 5.6e-251 870.9 607 75.9
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 5.6e-251 870.9 604 76.2
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.8e-250 868.6 604 75.0
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 6.2e-250 867.5 603 76.0
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 8.1e-250 867.1 604 75.2
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 3.1e-249 865.1 603 76.5
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 3.1e-249 865.1 603 75.8
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 8.9e-249 863.6 603 75.3
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 8.9e-249 863.6 606 75.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 4.4e-248 861.3 609 75.0
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.1e-246 856.7 606 73.6
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.1e-246 856.7 607 74.5
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 3.2e-246 855.1 601 75.2
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 3.2e-246 855.1 604 75.0
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 5.4e-246 854.4 601 75.4
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.2e-245 853.2 604 76.0
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.0e-244 850.1 606 72.8
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 8.7e-244 847.0 613 74.4
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 1.9e-243 845.9 603 75.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.6e-242 842.8 606 72.9
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 2.4e-241 839.0 614 73.1
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 3.1e-241 838.6 605 73.6
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 5.3e-241 837.8 605 73.4
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.3e-241 837.8 605 73.6
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 6.9e-241 837.4 604 73.2
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.2e-240 836.6 605 73.2
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.5e-240 836.3 614 69.9
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.4e-240 834.7 614 69.9
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 3.8e-239 831.6 602 71.9
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.9e-238 829.3 605 71.1
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.9e-238 829.3 605 72.6
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.4e-238 828.9 605 72.7
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.2e-238 828.6 608 72.0
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 4.2e-238 828.2 603 72.6
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 7.1e-238 827.4 603 73.5
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 7.1e-238 827.4 603 73.5
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.2e-237 826.6 605 72.4
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 6.0e-237 824.3 607 72.3
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.3e-236 823.2 605 71.7
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 6.6e-236 820.8 605 71.7
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 4.3e-235 818.1 605 71.9
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 7.3e-235 817.4 612 72.5
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.8e-234 815.5 607 70.7
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 2.8e-234 815.5 605 71.7
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 3.6e-234 815.1 602 71.4
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 8.1e-234 813.9 606 71.3
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 2.4e-233 812.4 613 69.2
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 6.9e-233 810.8 606 71.3
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.5e-232 809.7 607 70.8
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 4.5e-232 808.1 619 69.0
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.7e-231 806.2 618 70.4
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.2e-231 805.8 596 70.8
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.9e-231 805.4 605 70.9
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.4e-230 803.1 602 71.4
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 9.3e-230 800.4 602 70.1
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 7.9e-229 797.3 602 69.9
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 7.9e-229 797.3 602 70.6
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 5.1e-228 794.7 603 69.3
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 5.1e-228 794.7 602 69.4
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 9.6e-227 790.4 497 85.9
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 4.8e-226 788.1 608 68.4
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.1e-225 786.9 602 69.6
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 3.2e-222 775.4 607 68.0
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 7.1e-222 774.2 602 69.9
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 2.7e-221 772.3 603 67.0
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 3.9e-220 768.5 608 67.4
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.1e-218 762.7 605 68.8
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 3.7e-218 761.9 603 67.7
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 3.1e-217 758.8 607 67.4
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 5.3e-217 758.1 604 67.5
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 2.0e-216 756.1 613 67.4
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.4e-216 755.4 648 63.7
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.6e-213 746.5 618 64.7
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-212 743.4 607 66.1
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.9e-212 741.9 616 66.1
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 1.0e-207 727.2 625 64.0
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 5.5e-206 721.5 607 64.9
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.5e-203 712.6 536 71.8
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 5.3e-201 704.9 606 64.4
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.6e-200 702.6 603 64.7
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 3.2e-198 695.7 606 64.2
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.3e-194 683.7 570 64.4
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.5e-192 675.2 474 73.0
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.6e-171 606.3 609 57.8
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 9.2e-153 544.7 610 52.0
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.0e-151 541.2 606 50.8
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.3e-150 535.0 530 58.5
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.3e-143 514.2 609 51.4
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.2e-131 474.6 600 50.3
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 5.8e-131 472.2 619 43.8
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 7.6e-123 445.3 595 45.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 3.3e-86 323.6 209 75.6
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.2e-82 310.8 243 63.4
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.9e-82 310.5 326 52.8
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 9.1e-76 288.9 626 34.0
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 4.4e-62 243.4 592 31.2
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 2.7e-59 234.2 243 58.4
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.9e-58 230.7 220 58.2
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 3.8e-50 203.8 147 68.7
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 4.4e-46 190.3 151 68.2
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 1.2e-32 145.6 79 91.1
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 1.1e-31 142.5 79 89.9
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 8.9e-31 139.4 632 25.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.2e-30 139.0 98 65.3
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.5e-30 136.3 201 42.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.4e-20 104.8 72 68.1
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 4.7e-16 90.5 219 42.9
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.4e-15 88.2 114 42.1
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.6e-11 75.5 93 48.4
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.6e-10 70.1 59 61.0


User provided reference genes

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