Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 9.5e-145 516.9 279 100.0
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 2.1e-128 462.6 295 87.8
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 3.6e-128 461.8 295 88.1
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 2.4e-124 449.1 297 83.8
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 5.4e-124 448.0 293 85.7
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.6e-123 446.4 293 85.3
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.3e-122 442.6 294 85.4
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.3e-122 442.6 294 85.4
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 3.9e-122 441.8 293 83.6
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 6.6e-122 441.0 294 85.0
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 8.6e-122 440.7 293 84.3
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 2.8e-120 435.6 292 83.9
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 5.4e-116 421.4 293 81.6
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.2e-115 420.2 293 81.2
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 2.5e-113 412.5 298 78.5
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.3e-112 410.2 301 78.7
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.1e-111 407.1 297 76.8
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 2.6e-110 402.5 298 79.2
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.5e-105 386.7 264 80.3
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 2.3e-98 362.8 296 70.9
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.3e-96 357.1 296 69.3
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.3e-96 357.1 296 69.6
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 2.8e-96 355.9 296 69.6
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 6.9e-95 351.3 296 68.9
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 2.0e-94 349.7 297 68.7
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 2.6e-94 349.4 291 66.7
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 2.5e-92 342.8 262 72.9
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.5e-92 342.8 297 66.7
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 2.1e-91 339.7 296 66.2
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 2.7e-91 339.3 262 72.1
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 3.5e-91 339.0 262 70.2
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 4.6e-91 338.6 296 64.5
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.0e-90 337.4 296 64.2
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 1.0e-90 337.4 290 66.9
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.0e-90 337.4 296 65.2
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.3e-90 337.0 296 65.5
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 3.0e-90 335.9 291 67.4
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 8.7e-90 334.3 295 70.2
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.5e-89 333.6 296 65.2
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.5e-89 332.8 295 64.7
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.3e-89 332.0 296 65.5
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.7e-89 331.6 295 64.7
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.4e-89 331.3 295 64.4
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 7.4e-89 331.3 290 65.9
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 9.6e-89 330.9 297 66.0
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 9.6e-89 330.9 295 63.7
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.3e-88 330.5 278 68.3
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.1e-88 329.7 295 64.1
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 6.3e-88 328.2 295 63.7
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 8.2e-88 327.8 289 65.7
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 8.2e-88 327.8 295 65.1
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.1e-87 327.4 296 63.2
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.1e-87 327.4 296 63.2
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 2.4e-87 326.2 296 64.2
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 5.3e-87 325.1 263 69.6
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 9.0e-87 324.3 265 67.9
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 1.2e-86 323.9 259 70.3
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 2.6e-86 322.8 298 63.4
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 4.5e-86 322.0 296 64.2
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 5.9e-86 321.6 296 63.9
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.3e-85 320.5 259 69.9
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.7e-85 320.1 304 61.5
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 2.9e-85 319.3 270 67.0
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.9e-85 319.3 259 68.7
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 5.0e-85 318.5 295 62.7
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 6.5e-85 318.2 314 60.5
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.9e-84 316.6 295 61.7
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 5.5e-84 315.1 296 62.8
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 7.2e-84 314.7 297 63.6
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.3e-84 314.3 331 58.0
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 9.3e-84 314.3 298 60.7
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 2.7e-83 312.8 359 54.9
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 2.7e-83 312.8 296 60.8
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.0e-82 310.8 299 61.9
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 1.8e-82 310.1 294 63.6
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 3.0e-82 309.3 322 58.7
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 3.0e-82 309.3 320 58.8
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 2.2e-80 303.1 259 66.8
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.8e-80 302.8 296 60.1
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 4.8e-80 302.0 282 63.1
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 1.1e-79 300.8 260 65.4
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.4e-79 300.4 215 76.7
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.4e-79 299.7 257 63.4
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.5e-78 297.0 266 63.9
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 1.5e-78 297.0 296 60.8
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.0e-77 294.3 295 59.0
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 3.8e-77 292.4 296 60.1
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 5.0e-77 292.0 302 58.6
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 4.2e-76 288.9 257 62.3
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 2.7e-75 286.2 295 58.6
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 4.6e-75 285.4 253 63.2
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 4.6e-75 285.4 253 64.8
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 6.1e-75 285.0 294 60.2
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 7.9e-75 284.6 295 58.3
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 2.3e-74 283.1 385 48.6
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 2.6e-73 279.6 253 64.4
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 4.4e-73 278.9 388 49.0
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.7e-72 276.9 295 58.3
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.7e-72 276.9 338 52.7
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 2.8e-72 276.2 294 57.8
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 4.8e-72 275.4 253 60.9
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.7e-69 266.9 262 59.5
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.7e-69 266.9 221 66.1
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.4e-68 263.8 292 55.1
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.9e-68 263.5 267 58.8
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 3.7e-64 249.2 241 61.8
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.6e-62 243.8 252 54.0
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 3.2e-60 236.1 198 70.2
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.3e-58 229.9 217 60.4
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 4.5e-54 215.7 176 69.3
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 2.5e-52 209.9 183 67.2
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.0e-50 204.5 305 48.5
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 8.3e-48 194.9 183 61.7
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 5.9e-46 188.7 254 45.7
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.9e-45 186.4 242 43.8
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 3.8e-45 186.0 242 43.8
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 7.2e-44 181.8 275 45.5
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 2.8e-43 179.9 178 64.0
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 4.0e-42 176.0 229 45.9
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 7.0e-39 165.2 116 77.6
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 6.6e-37 158.7 234 43.6
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 6.8e-34 148.7 165 53.9
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 8.9e-34 148.3 245 35.5
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 7.3e-28 128.6 114 65.8
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 9.5e-28 128.3 178 50.0
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 2.8e-27 126.7 130 56.9
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 8.0e-27 125.2 152 49.3
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 5.8e-25 119.0 119 58.8
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.4e-23 114.4 93 68.8
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.9e-23 114.0 236 32.6
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 1.9e-23 114.0 177 44.1
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.4e-23 113.6 121 53.7
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.8e-18 97.4 108 52.8
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.8e-18 97.4 108 52.8
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 2.6e-17 93.6 108 51.9
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 3.0e-13 80.1 182 29.7
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.1e-11 73.9 97 49.5
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 3.6e-11 73.2 62 61.3
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 1.3e-08 64.7 196 29.6
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 1.4e-07 61.2 201 30.3
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 3.2e-07 60.1 50 62.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 3.2e-07 60.1 50 62.0
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 3.2e-07 60.1 50 62.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 3.2e-07 60.1 50 62.0


User provided reference genes

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