Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 4.8e-86 321.6 227 100.0
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.0e-68 263.1 227 82.4
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 2.5e-63 246.1 228 84.2
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 3.1e-61 239.2 228 72.8
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 1.7e-59 233.4 229 66.4
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 1.7e-59 233.4 229 66.4
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 1.7e-59 233.4 229 66.4
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 1.1e-58 230.7 229 64.2
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 1.9e-58 229.9 229 63.8
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 2.7e-57 226.1 231 64.5
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 7.9e-57 224.6 232 68.5
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 8.2e-46 188.0 231 55.4
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 8.0e-33 144.8 228 46.1
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 1.8e-29 133.7 227 50.7
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 5.4e-29 132.1 142 54.9
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 7.7e-28 128.3 138 58.7
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 1.7e-27 127.1 226 43.8
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 3.8e-27 125.9 227 43.6
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 3.8e-27 125.9 227 43.6
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 3.8e-27 125.9 140 55.7
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 5.0e-27 125.6 226 45.6
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 4.2e-26 122.5 225 43.6
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 4.2e-26 122.5 227 43.2
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 2.1e-25 120.2 224 46.4
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 4.7e-25 119.0 227 41.9
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 1.8e-24 117.1 228 42.5
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.8e-22 109.8 198 43.9
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.8e-21 107.1 135 51.9
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 9.1e-21 104.8 219 41.1
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 4.5e-20 102.4 125 52.0
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 4.5e-20 102.4 114 54.4
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 1.5e-18 97.4 116 50.9
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 4.3e-18 95.9 114 50.9
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 4.3e-18 95.9 126 50.8
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 5.6e-18 95.5 129 48.1
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 5.6e-18 95.5 129 48.8
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 7.2e-18 95.1 126 51.6
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 2.1e-17 93.6 117 52.1
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 4.7e-17 92.4 113 50.4
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 1.0e-16 91.3 124 51.6
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 1.0e-16 91.3 124 51.6
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.8e-16 90.5 112 50.9
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.8e-16 90.5 112 50.9
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.8e-16 90.5 112 50.9
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.8e-16 90.5 114 51.8
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 1.8e-16 90.5 112 51.8
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 2.3e-16 90.1 112 50.0
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.3e-16 90.1 112 50.0
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 3.0e-16 89.7 114 50.9
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 3.0e-16 89.7 116 50.0
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 4.0e-16 89.4 114 49.1
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 5.2e-16 89.0 114 50.9
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 6.8e-16 88.6 114 50.9
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 8.9e-16 88.2 113 46.9
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 8.9e-16 88.2 113 46.9
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 8.9e-16 88.2 115 47.8
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 1.2e-15 87.8 117 52.1
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 1.5e-15 87.4 131 45.8
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 1.5e-15 87.4 121 45.5
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 1.5e-15 87.4 130 44.6
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 2.6e-15 86.7 114 49.1
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 2.6e-15 86.7 114 50.0
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 3.4e-15 86.3 114 50.0
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 3.4e-15 86.3 129 45.0
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 4.4e-15 85.9 125 40.8
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 4.4e-15 85.9 123 46.3
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 4.4e-15 85.9 123 46.3
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 4.4e-15 85.9 114 48.2
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 9.8e-15 84.7 114 48.2
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 1.7e-14 84.0 117 46.2
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 2.2e-14 83.6 108 47.2
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 2.9e-14 83.2 115 47.8
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 3.7e-14 82.8 115 47.8
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 3.7e-14 82.8 126 45.2
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 3.7e-14 82.8 123 43.1
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 3.7e-14 82.8 135 41.5
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 8.3e-14 81.6 115 47.0
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 8.3e-14 81.6 113 46.0
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 8.3e-14 81.6 111 46.8
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 8.3e-14 81.6 115 44.3
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 1.1e-13 81.3 113 46.0
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 1.1e-13 81.3 116 47.4
C03p53500 Brassica napus HOM05D005697 ORTHO05D006951 1.4e-13 80.9 113 61.9
BolC3t17610H Brassica oleracea HOM05D005697 ORTHO05D006951 1.4e-13 80.9 113 61.9
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.4e-13 80.9 119 42.9
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.4e-13 80.1 114 45.6
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 2.4e-13 80.1 115 47.0
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 4.1e-13 79.3 113 45.1
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 4.1e-13 79.3 113 45.1
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 5.4e-13 79.0 114 48.2
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 5.4e-13 79.0 106 47.2
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 5.4e-13 79.0 113 44.2
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 7.0e-13 78.6 122 43.4
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 7.0e-13 78.6 114 47.4
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 9.2e-13 78.2 109 46.8
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 9.2e-13 78.2 109 46.8
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.6e-12 77.4 109 44.0
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 1.6e-12 77.4 109 44.0
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 2.7e-12 76.6 121 42.1
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 2.7e-12 76.6 110 46.4
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 2.7e-12 76.6 115 47.0
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 3.5e-12 76.3 113 44.2
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 3.5e-12 76.3 119 44.5
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.5e-12 76.3 104 46.2
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 4.6e-12 75.9 107 48.6
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.6e-12 75.9 106 47.2
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 5.9e-12 75.5 116 44.8
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 7.8e-12 75.1 114 44.7
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 1.0e-11 74.7 109 44.0
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 3.0e-11 73.2 117 41.9
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 3.9e-11 72.8 114 42.1
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 3.9e-11 72.8 112 42.9
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 6.6e-11 72.0 109 43.1
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 8.6e-11 71.6 116 42.2
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 1.1e-10 71.2 113 42.5
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.5e-10 70.9 123 40.7
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 1.9e-10 70.5 115 45.2
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 1.9e-10 70.5 115 40.0
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 3.3e-10 69.7 115 40.0
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 4.3e-10 69.3 109 46.8
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 1.2e-09 67.8 106 45.3
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 8.0e-09 65.1 102 45.1
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 1.0e-08 64.7 110 43.6
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 1.8e-08 63.9 105 43.8
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 5.2e-08 62.4 78 48.7
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 5.2e-08 62.4 90 46.7
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 1.5e-07 60.8 112 38.4
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 7.5e-07 58.5 86 47.7
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 3.7e-06 56.2 112 35.7


User provided reference genes

Program Settings