Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 2.4e-188 662.1 360 100.0
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 4.5e-163 578.2 366 87.2
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 3.8e-162 575.1 366 86.1
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 9.7e-150 533.9 367 82.0
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 1.4e-148 530.0 367 80.4
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 5.3e-148 528.1 367 81.7
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 6.9e-148 527.7 362 81.5
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 5.9e-147 524.6 367 80.4
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 7.7e-147 524.2 362 80.9
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 5.0e-146 521.5 363 79.9
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 6.5e-146 521.2 364 79.7
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 6.5e-146 521.2 364 79.7
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 3.2e-145 518.8 365 79.5
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 3.2e-145 518.8 368 79.6
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 3.2e-145 518.8 365 79.5
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 3.2e-145 518.8 368 79.6
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 7.2e-145 517.7 363 79.3
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 7.2e-145 517.7 363 79.3
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.7e-144 515.8 362 80.7
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 5.1e-143 511.5 363 80.4
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 6.7e-143 511.1 361 79.2
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 5.7e-142 508.1 362 79.8
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 8.5e-138 494.2 349 79.7
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.2e-118 430.6 334 73.4
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 8.3e-109 397.9 371 60.9
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 5.2e-103 378.6 374 58.6
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.6e-83 313.9 368 50.5
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.1e-83 313.5 368 49.5
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 5.1e-82 308.9 372 49.5
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 2.8e-80 303.1 373 50.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.1e-80 301.6 372 49.5
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.8e-79 300.4 365 49.3
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.8e-79 300.4 368 50.3
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.0e-79 299.3 372 48.9
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 5.2e-79 298.9 372 50.0
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.2e-78 297.7 369 49.3
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.2e-78 297.7 369 49.3
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.5e-78 297.4 378 46.8
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.5e-78 297.4 372 48.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.5e-78 297.4 364 48.4
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.0e-78 297.0 372 49.2
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 3.4e-78 296.2 369 49.9
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 3.4e-78 296.2 369 49.9
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.4e-78 295.8 378 47.1
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-77 294.3 372 49.2
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.4e-76 290.8 372 48.7
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.4e-76 290.8 323 52.3
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.9e-76 290.4 373 48.3
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.2e-76 289.3 367 46.9
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 4.2e-76 289.3 368 49.5
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.1e-76 288.5 371 46.6
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.2e-75 287.7 373 46.6
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.6e-75 285.8 379 46.7
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 3.0e-74 283.1 367 48.0
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.6e-74 282.0 379 46.7
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 6.6e-74 282.0 364 47.8
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 3.3e-73 279.6 371 46.9
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.3e-73 279.6 371 45.6
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 5.6e-73 278.9 364 47.3
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.3e-73 278.5 371 45.8
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.3e-72 277.7 374 47.3
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.3e-72 277.7 374 47.3
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 8.1e-72 275.0 365 47.1
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 3.1e-71 273.1 352 45.7
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 5.3e-71 272.3 366 46.4
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 6.9e-71 271.9 372 46.0
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 6.9e-71 271.9 357 47.3
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 9.0e-71 271.6 320 50.3
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 4.4e-70 269.2 356 46.6
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 7.6e-70 268.5 325 48.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 7.6e-70 268.5 337 49.3
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.3e-69 267.7 355 46.5
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 2.2e-69 266.9 363 45.5
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.9e-69 266.5 351 47.3
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 3.8e-69 266.2 371 46.4
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.9e-69 265.8 337 46.9
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.4e-68 263.5 374 43.0
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 3.2e-68 263.1 367 46.3
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 4.2e-68 262.7 377 42.2
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 7.1e-68 261.9 375 44.0
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.6e-67 260.8 370 45.9
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 6.0e-67 258.8 373 42.9
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 7.9e-67 258.5 365 42.5
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.0e-66 258.1 366 43.7
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 8.7e-66 255.0 360 45.0
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.1e-65 254.6 365 44.4
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.9e-65 253.8 367 43.6
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.6e-64 250.8 358 44.7
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 3.6e-64 249.6 364 44.2
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.6e-64 249.6 412 42.5
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 4.8e-64 249.2 364 44.2
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 4.8e-64 249.2 348 45.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 5.3e-63 245.7 378 42.3
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 9.0e-63 245.0 376 42.8
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 2.6e-62 243.4 348 43.4
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 3.4e-62 243.0 371 42.0
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 5.8e-62 242.3 374 40.9
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 7.6e-62 241.9 307 45.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.3e-61 241.1 375 41.9
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 4.9e-61 239.2 374 41.2
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.4e-60 236.9 370 42.4
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 3.2e-60 236.5 347 44.1
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 5.5e-60 235.7 369 43.4
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 9.3e-60 235.0 370 42.7
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.6e-59 234.2 328 43.6
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 7.9e-59 231.9 371 43.4
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 2.3e-58 230.3 349 43.6
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 3.0e-58 229.9 370 43.2
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.6e-56 224.2 369 40.9
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 2.8e-56 223.4 374 40.9
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 4.0e-55 219.5 305 43.3
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 4.0e-55 219.5 347 39.8
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.5e-54 217.6 321 44.5
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.0e-53 214.9 344 39.0
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.9e-53 213.4 372 39.0
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 4.9e-53 212.6 332 41.3
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 8.4e-53 211.8 370 37.8
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.4e-52 211.1 364 41.5
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 4.2e-52 209.5 347 42.4
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 5.5e-52 209.1 372 37.6
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 5.5e-52 209.1 358 35.2
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 2.1e-51 207.2 325 40.0
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.1e-51 207.2 394 38.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.8e-50 204.1 355 39.2
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 5.3e-47 192.6 372 37.9
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 6.5e-45 185.7 282 41.5
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.4e-44 184.5 331 37.2
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 2.7e-43 180.3 189 51.9
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 6.1e-43 179.1 277 39.7
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.8e-42 177.6 279 41.9
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.5e-28 130.6 129 58.1
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.1e-25 121.7 130 53.1
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.1e-25 121.7 383 32.6
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.1e-23 115.2 385 30.6
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.0e-22 110.9 158 40.5
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.2e-21 107.5 138 40.6
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.1e-19 99.4 130 42.3
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.0e-18 97.1 125 42.4
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.2e-16 90.9 158 38.6
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 6.3e-16 89.4 375 25.3
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 9.1e-15 85.5 256 28.9
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.7e-14 84.0 356 24.2
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.9e-14 82.8 198 31.3
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 7.7e-14 82.4 357 24.4
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 2.7e-11 73.9 100 40.0
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.2e-09 68.6 240 25.8
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.4e-07 61.6 129 29.5
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.4e-07 61.6 95 41.1
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 1.2e-06 58.5 61 45.9
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 5.9e-06 56.2 83 38.6
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 5.9e-06 56.2 83 38.6


User provided reference genes

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