Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2350 Capsella rubella HOM05D006411 ORTHO05D007563 5.2e-125 451.1 225 100.0
AL3G37910 Arabidopsis lyrata HOM05D006411 ORTHO05D007563 3.6e-110 401.7 224 87.9
AT3G23255 Arabidopsis thaliana HOM05D006411 ORTHO05D007563 8.3e-107 390.6 223 86.1
Sp3g20930 Schrenkiella parvula HOM05D006411 ORTHO05D007563 9.5e-95 350.5 229 78.2
BcaB06g26470 Brassica carinata HOM05D006411 ORTHO05D007563 4.0e-93 345.1 227 76.2
Thhalv10021467m.g Eutrema salsugineum HOM05D006411 ORTHO05D007563 4.0e-93 345.1 229 77.3
C07p14190 Brassica napus HOM05D006411 ORTHO05D007563 6.4e-91 337.8 227 76.7
Aa31LG8G9800 Aethionema arabicum HOM05D006411 ORTHO05D007563 1.4e-90 336.7 229 75.1
BraA07t28715Z Brassica rapa HOM05D006411 ORTHO05D007563 1.9e-90 336.3 226 76.1
A07p09200 Brassica napus HOM05D006411 ORTHO05D007563 3.2e-90 335.5 227 75.3
BolC7t41915H Brassica oleracea HOM05D006411 ORTHO05D007563 4.1e-90 335.1 226 76.1
Carub.0137s0001 Capsella rubella HOM05D006411 ORTHO05D007563 2.3e-88 329.3 167 98.2
CARHR099210 Cardamine hirsuta HOM05D006411 ORTHO05D007563 2.1e-81 306.2 192 79.2
THA.LOC104808624 Tarenaya hassleriana HOM05D006411 ORTHO05D007563 4.3e-79 298.5 229 67.7
Dinv09212 Davidia involucrata HOM05D006411 ORTHO05D007563 3.1e-69 265.8 231 60.2
Atru.chr12.1401 Acer truncatum HOM05D006411 ORTHO05D007563 4.4e-68 261.9 229 61.6
Prupe.1G216800 Prunus persica HOM05D006411 ORTHO05D007563 7.6e-68 261.2 234 58.1
TAR371G0942 Trochodendron aralioides HOM05D006411 ORTHO05D007563 7.6e-68 261.2 239 59.4
TWI18G1006 Tripterygium wilfordii HOM05D006411 ORTHO05D007563 9.9e-68 260.8 235 57.9
QL03p049668 Quercus lobata HOM05D006411 ORTHO05D007563 1.7e-67 260.0 236 59.3
Duzib132G0393 Durio zibethinus HOM05D006411 ORTHO05D007563 1.1e-66 257.3 232 58.2
GSVIVG01004943001 Vitis vinifera HOM05D006411 ORTHO05D007563 1.4e-66 256.9 235 59.6
Solyc12g016210.2 Solanum lycopersicum HOM05D006411 ORTHO05D007563 4.2e-66 255.4 226 59.7
Sopen12g008000 Solanum pennellii HOM05D006411 ORTHO05D007563 4.2e-66 255.4 226 59.7
Actinidia09598 Actinidia chinensis HOM05D006411 ORTHO05D007563 7.1e-66 254.6 232 59.1
Haze_12492 Corylus avellana HOM05D006411 ORTHO05D007563 7.1e-66 254.6 232 57.8
Manes.09G187200 Manihot esculenta HOM05D006411 ORTHO05D007563 1.2e-65 253.8 238 58.4
Gohir.A01G141100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 1.6e-65 253.4 234 59.0
Sabra03G0118900 Salix brachista HOM05D006411 ORTHO05D007563 2.7e-65 252.7 241 55.2
Cfa009441 Carpinus fangiana HOM05D006411 ORTHO05D007563 1.3e-64 250.4 228 58.3
Gorai.002G163700 Gossypium raimondii HOM05D006411 ORTHO05D007563 2.3e-64 249.6 234 58.1
Nitab4.5_0003020g0130 Nicotiana tabacum HOM05D006411 ORTHO05D007563 2.3e-64 249.6 228 57.5
MD16G1129800 Malus domestica HOM05D006411 ORTHO05D007563 1.5e-63 246.9 233 54.9
Migut.K01066 Erythranthe guttata HOM05D006411 ORTHO05D007563 5.6e-63 245.0 230 57.0
Lsat_1_v5_gn_2_17720 Lactuca sativa HOM05D006411 ORTHO05D007563 1.3e-62 243.8 226 55.3
FAN17G2521 Fragaria x ananassa HOM05D006411 ORTHO05D007563 1.6e-62 243.4 231 54.5
Nitab4.5_0002671g0040 Nicotiana tabacum HOM05D006411 ORTHO05D007563 1.6e-62 243.4 236 55.5
MD13G1129600 Malus domestica HOM05D006411 ORTHO05D007563 2.8e-62 242.7 232 54.7
RhsimUnG0101400 Rhododendron simsii HOM05D006411 ORTHO05D007563 2.8e-62 242.7 213 59.6
RcHm_v2.0_Chr4g0429021 Rosa chinensis HOM05D006411 ORTHO05D007563 2.8e-62 242.7 231 54.5
SGA_v2.0_scaffold80G25942 Striga asiatica HOM05D006411 ORTHO05D007563 2.8e-62 242.7 234 54.3
FvH4_4g22791 Fragaria vesca HOM05D006411 ORTHO05D007563 3.6e-62 242.3 231 54.5
CANSAT01G2250 Cannabis sativa HOM05D006411 ORTHO05D007563 4.8e-62 241.9 237 57.4
CAN.G529.4 Capsicum annuum HOM05D006411 ORTHO05D007563 6.2e-62 241.5 226 55.3
Nn1g07843 Nelumbo nucifera HOM05D006411 ORTHO05D007563 6.2e-62 241.5 243 54.3
Nn3g20757 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.1e-61 240.7 219 57.1
Oeu044509.2 Olea europaea HOM05D006411 ORTHO05D007563 2.4e-61 239.6 228 57.0
Thecc.02G193900 Theobroma cacao HOM05D006411 ORTHO05D007563 2.0e-60 236.5 205 60.0
MSTRG.461 Avicennia marina HOM05D006411 ORTHO05D007563 3.4e-60 235.7 233 54.1
SalBow2G2156 Salvia bowleyana HOM05D006411 ORTHO05D007563 3.4e-60 235.7 234 53.8
SalBow7G1895 Salvia bowleyana HOM05D006411 ORTHO05D007563 5.8e-60 235.0 236 53.4
CSS0035608 Camellia sinensis var. sinensis HOM05D006411 ORTHO05D007563 1.3e-59 233.8 235 56.2
FAN12G0338 Fragaria x ananassa HOM05D002780 ORTHO05D003254 1.3e-59 233.8 228 53.5
Lj3g0004314 Lotus japonicus HOM05D006411 ORTHO05D007563 2.9e-59 232.6 241 56.0
Sed0009782 Sechium edule HOM05D006411 ORTHO05D007563 6.4e-59 231.5 210 57.1
Ah.03g135590 Amaranthus hybridus HOM05D006411 ORTHO05D007563 5.4e-58 228.4 237 52.7
Aqoxy5G03164 Aquilegia oxysepala HOM05D006411 ORTHO05D007563 1.2e-57 227.3 214 55.1
CsaV3_6G007790 Cucumis sativus L. HOM05D006411 ORTHO05D007563 1.2e-57 227.3 210 56.2
HanXRQChr17g0559141 Helianthus annuus HOM05D006411 ORTHO05D007563 1.2e-57 227.3 229 53.3
SHI04127 Sapria himalayana HOM05D006411 ORTHO05D007563 2.7e-57 226.1 239 51.0
Zm00001eb222220 Zea mays HOM05D006411 ORTHO05D007563 3.5e-57 225.7 234 53.0
Glyma.11G109300 Glycine max HOM05D006411 ORTHO05D007563 1.0e-56 224.2 218 56.9
EL10Ac6g13598 Beta vulgaris HOM05D006411 ORTHO05D007563 1.3e-56 223.8 245 51.0
Ciclev10005785m.g Citrus clementina HOM05D006411 ORTHO05D007563 5.1e-56 221.9 214 56.1
Sc11g0000150 Simmondsia chinensis HOM05D006411 ORTHO05D007563 6.6e-56 221.5 195 59.5
TPR.G28023 Trifolium pratense HOM05D006411 ORTHO05D007563 6.6e-56 221.5 225 55.6
VMungo1127G0609 Vigna mungo HOM05D006411 ORTHO05D007563 6.6e-56 221.5 217 58.5
AUR62031618 Chenopodium quinoa HOM05D006411 ORTHO05D007563 1.9e-55 219.9 216 53.7
Psat7g169880 Pisum sativum HOM05D006411 ORTHO05D007563 4.3e-55 218.8 221 56.6
Os10g0466100 Oryza sativa ssp. japonica HOM05D006411 ORTHO05D007563 7.4e-55 218.0 234 51.3
Hund06130 Selenicereus undatus HOM05D006411 ORTHO05D007563 1.6e-54 216.9 257 51.0
Cc11_g15120 Coffea canephora HOM05D006411 ORTHO05D007563 2.1e-54 216.5 212 54.2
ATR0751G011 Amborella trichopoda HOM05D006411 ORTHO05D006707 2.8e-54 216.1 234 50.9
Actinidia34001 Actinidia chinensis HOM05D006411 ORTHO05D007563 1.8e-53 213.4 188 60.1
PSO349G0017 Papaver somniferum HOM05D006411 ORTHO05D007563 1.5e-52 210.3 278 46.4
Gohir.D01G132100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 2.0e-52 209.9 187 59.4
PSO765G0094 Papaver somniferum HOM05D006411 ORTHO05D007563 3.4e-52 209.1 279 47.0
Ca_18949_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 1.7e-51 206.8 212 55.7
Ca_29765_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 1.7e-51 206.8 212 55.7
PGR119G0335 Punica granatum HOM05D006411 ORTHO05D007563 2.9e-51 206.1 231 51.5
ECA238G0094 Erigeron canadensis HOM05D006411 ORTHO05D007563 5.5e-50 201.8 215 53.0
HPP92_007040 Vanilla planifolia HOM05D006411 ORTHO05D007563 1.3e-48 197.2 234 49.1
SEGI_29411 Sequoiadendron giganteum HOM05D006411 ORTHO05D007563 5.1e-48 195.3 216 49.5
Lalb_Chr19g0140051 Lupinus albus HOM05D006411 ORTHO05D007563 8.7e-48 194.5 220 51.8
CiPaw.05G102200 Carya illinoinensis HOM05D006411 ORTHO05D007563 5.6e-47 191.8 226 50.4
Phvul.011G018400 Phaseolus vulgaris HOM05D006411 ORTHO05D007563 3.1e-45 186.0 177 58.8
arahy.Tifrunner.gnm1.ann1.ZM7ZD1 Arachis hypogaea HOM05D006411 ORTHO05D007563 4.5e-44 182.2 214 49.5
vmacro10313 Vaccinium macrocarpon HOM05D006411 ORTHO05D007563 2.9e-43 179.5 172 56.4
Nn2g15361 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.0e-40 171.0 169 52.7
CBR_g41204 Chara braunii HOM05D006411 ORTHO05D007563 2.3e-40 169.9 211 45.5
ClCG06G001760 Citrullus lanatus HOM05D006411 ORTHO05D007563 1.9e-39 166.8 176 52.3
Nn3g17917 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.9e-39 166.8 166 51.8
Medtr4g078190 Medicago truncatula HOM05D006411 ORTHO05D007563 5.7e-39 165.2 133 65.4
MELO3C022353.2 Cucumis melo HOM05D006411 ORTHO05D007563 2.8e-38 162.9 194 48.5
Pp3c2_21820 Physcomitrium patens HOM05D006411 ORTHO05D007563 2.8e-38 162.9 204 44.1
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 3.1e-37 159.5 204 45.6
Potri.003G163500 Populus trichocarpa HOM05D006411 ORTHO05D007563 9.0e-37 157.9 149 52.3
AagrBONN_evm.TU.Sc2ySwM_344.2329 Anthoceros agrestis HOM05D014047 ORTHO05D007563 2.5e-34 149.8 180 47.8
COL.COLO4_21790 Corchorus olitorius HOM05D006411 ORTHO05D007563 5.5e-34 148.7 237 43.9
Mapoly0164s0017 Marchantia polymorpha HOM05D006411 ORTHO05D007563 6.7e-32 141.7 199 41.2
AUR62010749 Chenopodium quinoa HOM05D006411 ORTHO05D007563 1.9e-31 140.2 146 52.1
AUR62020519 Chenopodium quinoa HOM05D006411 ORTHO05D007563 2.2e-30 136.7 143 51.7
Lj5g0007299 Lotus japonicus HOM05D006411 ORTHO05D007563 5.3e-29 132.1 161 48.4
FvH4_4g07260 Fragaria vesca HOM05D006411 ORTHO05D007563 7.4e-23 111.7 97 57.7
SHI32270 Sapria himalayana HOM05D006411 ORTHO05D007563 4.5e-20 102.4 158 40.5
Dinv15386 Davidia involucrata HOM05D006411 ORTHO05D007563 3.0e-16 89.7 57 73.7
MCO06G175 Micromonas commoda HOM05D006411 ORTHO05D007563 1.1e-15 87.8 176 31.2
Nn7g35834 Nelumbo nucifera HOM05D006411 ORTHO05D007563 9.7e-15 84.7 73 57.5
Nn7g35833 Nelumbo nucifera HOM05D006411 ORTHO05D007563 5.3e-13 79.0 57 71.9
SMO119G0262 Selaginella moellendorffii HOM05D006411 ORTHO05D007563 9.1e-13 78.2 132 35.6
AUR62015683 Chenopodium quinoa HOM05D006411 ORTHO05D007563 5.9e-12 75.5 71 57.7
Peaxi162Scf00217g00911 Petunia axillaris HOM05D006411 ORTHO05D007563 2.1e-09 67.0 135 34.1
SGA_v2.0_scaffold360G49865 Striga asiatica HOM05D020805 ORTHO05D007563 4.7e-09 65.9 72 48.6
Nn2g15434 Nelumbo nucifera HOM05D006411 ORTHO05D007563 4.4e-07 59.3 179 33.5
MBI02_g46060_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 1.7e-06 57.4 37 67.6
MBI05_g34743_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 2.8e-06 56.6 56 51.8
CAN.G1161.15 Capsicum annuum HOM05D000064 ORTHO05D007563 3.7e-06 56.2 50 54.0
Glyma.12G016051 Glycine max HOM05D006411 ORTHO05D007563 4.8e-06 55.8 97 38.1
MBI04_g21533_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 8.2e-06 55.1 36 66.7


User provided reference genes

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