Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.1e-56 223.0 113 100.0
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.0e-41 171.4 113 81.4
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.8e-41 170.6 113 82.3
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.0e-33 144.8 114 78.1
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 2.8e-31 138.7 115 73.9
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 4.9e-31 137.9 115 73.0
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.1e-30 136.7 115 73.9
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.4e-30 135.6 115 73.0
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.0e-29 132.5 109 68.8
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 2.3e-28 129.0 117 70.9
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 6.6e-28 127.5 117 70.1
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 8.6e-28 127.1 115 71.3
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 8.0e-26 120.6 109 71.6
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.3e-23 113.2 113 54.0
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.3e-19 98.6 103 53.4
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 9.8e-16 87.0 115 47.8
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.3e-15 86.7 114 46.5
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.2e-15 85.9 113 45.1
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.2e-15 85.9 111 46.8
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.9e-14 82.8 114 49.1
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.2e-14 82.0 113 47.8
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.6e-13 79.7 105 50.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 7.8e-13 77.4 114 44.7
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-12 77.0 114 44.7
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.0e-12 77.0 113 44.2
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.3e-12 76.6 116 45.7
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.3e-12 76.6 127 43.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.3e-12 76.6 127 43.3
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.7e-12 76.3 114 43.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.7e-12 76.3 104 47.1
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 5.0e-12 74.7 100 48.0
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.0e-12 74.7 108 45.4
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 8.6e-12 73.9 114 43.9
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 8.6e-12 73.9 114 43.9
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 8.6e-12 73.9 114 43.9
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.5e-11 73.2 97 47.4
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.9e-11 72.8 101 47.5
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.9e-11 72.8 101 49.5
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 2.5e-11 72.4 116 48.3
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 3.3e-11 72.0 116 43.1
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 3.3e-11 72.0 101 42.6
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 4.3e-11 71.6 110 44.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.3e-11 71.6 118 44.9
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 4.3e-11 71.6 95 46.3
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 5.6e-11 71.2 97 45.4
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 5.6e-11 71.2 96 47.9
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.6e-11 71.2 115 42.6
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 5.6e-11 71.2 101 48.5
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 7.3e-11 70.9 96 49.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.3e-11 70.9 116 41.4
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.3e-11 70.9 116 41.4
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 7.3e-11 70.9 105 41.9
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 7.3e-11 70.9 96 51.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.3e-11 70.9 98 42.9
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.3e-11 70.9 98 42.9
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.5e-11 70.5 118 44.9
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.2e-10 70.1 102 48.0
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.2e-10 70.1 98 46.9
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.2e-10 70.1 94 48.9
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.6e-10 69.7 118 44.9
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 1.6e-10 69.7 108 39.8
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.1e-10 69.3 99 47.5
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.1e-10 69.3 106 46.2
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.1e-10 69.3 103 44.7
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.1e-10 69.3 115 45.2
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.1e-10 69.3 96 50.0
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.1e-10 69.3 104 38.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.8e-10 68.9 101 45.5
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 2.8e-10 68.9 105 47.6
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 3.6e-10 68.6 95 45.3
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.6e-10 68.6 89 48.3
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 4.7e-10 68.2 99 48.5
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.7e-10 68.2 101 44.6
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.7e-10 68.2 112 42.9
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.7e-10 68.2 105 41.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 6.2e-10 67.8 99 44.4
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 6.2e-10 67.8 122 42.6
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 6.2e-10 67.8 105 46.7
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 6.2e-10 67.8 107 42.1
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 6.2e-10 67.8 103 45.6
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 8.1e-10 67.4 99 44.4
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.1e-10 67.4 96 45.8
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 8.1e-10 67.4 92 45.7
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.1e-09 67.0 101 44.6
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.1e-09 67.0 106 45.3
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.1e-09 67.0 116 44.0
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.4e-09 66.6 97 46.4
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.8e-09 66.2 93 46.2
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.3e-09 65.9 117 42.7
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.3e-09 65.9 104 44.2
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 3.1e-09 65.5 111 40.5
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 4.0e-09 65.1 116 37.9
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 4.0e-09 65.1 97 45.4
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.2e-09 64.7 92 46.7
BolC3t17568H Brassica oleracea HOM05D037847 ORTHO05D032416 5.2e-09 64.7 55 69.1
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.2e-09 64.7 118 44.9
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.2e-09 64.7 110 40.9
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 5.2e-09 64.7 89 48.3
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 5.2e-09 64.7 97 48.5
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 6.8e-09 64.3 98 44.9
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 6.8e-09 64.3 101 43.6
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.9e-09 63.9 100 43.0
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 8.9e-09 63.9 103 41.7
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.2e-08 63.5 93 43.0
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.2e-08 63.5 92 45.7
BcaC01g03387 Brassica carinata HOM05D037847 ORTHO05D032416 1.2e-08 63.5 112 47.3
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-08 63.5 89 44.9
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-08 63.5 89 44.9
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.5e-08 63.2 111 43.2
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.5e-08 63.2 104 45.2
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.5e-08 63.2 98 44.9
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.5e-08 63.2 111 40.5
C03p53040 Brassica napus HOM05D037847 ORTHO05D032416 2.0e-08 62.8 55 69.1
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.0e-08 62.8 96 43.8
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.6e-08 62.4 89 44.9
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 2.6e-08 62.4 99 39.4
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.6e-08 62.4 91 44.0
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.4e-08 62.0 110 40.9
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.4e-08 62.0 110 40.9
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.4e-08 62.0 108 41.7
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 4.4e-08 61.6 86 44.2
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 4.4e-08 61.6 86 44.2
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 4.4e-08 61.6 89 44.9
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.4e-08 61.6 89 43.8
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.4e-08 61.6 122 41.8
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.4e-08 61.6 97 44.3
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 4.4e-08 61.6 96 40.6
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 4.4e-08 61.6 109 38.5
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.4e-08 61.6 100 43.0
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.8e-08 61.2 92 45.7
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.8e-08 61.2 97 43.3
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 5.8e-08 61.2 107 43.0
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 7.5e-08 60.8 84 45.2
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 7.5e-08 60.8 113 38.1
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.5e-08 60.8 103 42.7
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.3e-07 60.1 111 40.5
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.3e-07 60.1 111 40.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.7e-07 59.7 101 41.6
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.9e-07 58.9 101 37.6
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 2.9e-07 58.9 91 45.1
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 2.9e-07 58.9 103 43.7
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 2.9e-07 58.9 103 43.7
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.9e-07 58.9 97 41.2
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.7e-07 58.5 105 42.9
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 4.9e-07 58.2 92 39.1
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 8.3e-07 57.4 111 38.7
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.1e-06 57.0 93 40.9
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.1e-06 57.0 110 37.3
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.1e-06 57.0 111 41.4
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.1e-06 57.0 111 41.4
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.4e-06 56.6 121 38.0
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.9e-06 56.2 101 41.6
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.4e-06 55.8 96 41.7
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 4.1e-06 55.1 98 39.8
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 7.1e-06 54.3 103 41.7
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 9.2e-06 53.9 101 42.6


User provided reference genes

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