Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 5.0e-68 261.2 149 100.0
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.2e-64 250.0 149 96.6
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 2.0e-64 249.2 149 89.9
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 9.8e-64 246.9 149 87.2
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 9.2e-62 240.4 150 88.0
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 3.8e-60 235.0 149 87.2
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.5e-56 223.0 141 84.4
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.5e-56 223.0 141 84.4
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.0e-56 222.6 142 83.8
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.6e-56 222.2 143 83.2
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 4.4e-56 221.5 141 83.7
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.9e-55 218.8 140 83.6
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.9e-55 218.8 140 83.6
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.9e-55 218.8 140 83.6
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.4e-54 216.5 150 81.3
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 1.8e-54 216.1 139 81.3
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.8e-54 216.1 145 81.4
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 3.2e-54 215.3 136 84.6
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 3.2e-54 215.3 145 81.4
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 5.4e-54 214.5 150 80.7
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 2.0e-53 212.6 136 82.4
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 3.5e-53 211.8 145 80.7
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 7.8e-53 210.7 149 77.9
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 4.4e-48 194.9 150 73.3
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 4.4e-48 194.9 150 73.3
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 4.4e-48 194.9 150 73.3
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 4.9e-47 191.4 149 71.1
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 4.9e-47 191.4 143 72.0
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 8.3e-47 190.7 150 72.0
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.9e-46 189.5 148 73.0
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.2e-46 188.7 148 68.2
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 3.2e-46 188.7 150 70.0
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 4.1e-46 188.3 149 68.5
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 4.1e-46 188.3 149 68.5
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 7.0e-46 187.6 138 71.7
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 9.2e-46 187.2 150 69.3
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 9.2e-46 187.2 142 72.5
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.2e-45 186.8 147 68.7
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.2e-45 186.8 138 69.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.2e-45 186.8 142 72.5
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.2e-45 186.8 140 72.9
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 1.6e-45 186.4 150 70.0
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.6e-45 186.4 142 71.8
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.0e-45 186.0 150 69.3
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 2.7e-45 185.7 145 69.7
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.7e-45 185.7 148 70.9
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 4.6e-45 184.9 149 67.8
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 4.6e-45 184.9 142 71.8
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 7.8e-45 184.1 140 72.1
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 7.8e-45 184.1 150 67.3
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.0e-44 183.7 150 68.7
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.3e-44 183.3 145 68.3
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.7e-44 183.0 140 70.0
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 1.7e-44 183.0 150 68.0
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.7e-44 183.0 139 71.2
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 2.3e-44 182.6 150 67.3
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 2.3e-44 182.6 150 67.3
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 2.3e-44 182.6 139 71.2
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 3.0e-44 182.2 137 70.1
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 3.0e-44 182.2 138 68.8
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 3.0e-44 182.2 148 70.3
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 3.0e-44 182.2 144 69.4
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.0e-44 182.2 144 69.4
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.0e-44 182.2 144 69.4
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 3.0e-44 182.2 143 69.2
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.9e-44 181.8 144 68.1
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 3.9e-44 181.8 140 70.7
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 5.0e-44 181.4 147 66.7
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 5.0e-44 181.4 138 69.6
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 5.0e-44 181.4 146 65.8
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 5.0e-44 181.4 144 69.4
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 5.0e-44 181.4 144 69.4
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 6.6e-44 181.0 149 67.1
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 8.6e-44 180.6 147 67.3
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 8.6e-44 180.6 142 68.3
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.1e-43 180.3 146 67.1
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.1e-43 180.3 146 67.8
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.1e-43 180.3 143 68.5
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 1.9e-43 179.5 146 65.1
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.9e-43 179.5 139 69.8
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.9e-43 179.5 150 66.0
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.5e-43 179.1 140 67.1
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 2.5e-43 179.1 148 66.9
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 2.5e-43 179.1 145 66.9
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.5e-43 179.1 139 70.5
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.5e-43 179.1 144 69.4
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.3e-43 178.7 149 65.1
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 4.3e-43 178.3 139 69.8
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.3e-43 178.3 144 68.1
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.3e-43 178.3 139 69.1
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 4.3e-43 178.3 140 70.0
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.6e-43 177.9 149 64.4
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 5.6e-43 177.9 140 69.3
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 5.6e-43 177.9 149 67.8
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 5.6e-43 177.9 145 67.6
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 5.6e-43 177.9 139 68.3
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 5.6e-43 177.9 140 68.6
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 5.6e-43 177.9 140 67.9
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 7.3e-43 177.6 139 69.8
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 9.5e-43 177.2 141 68.8
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 9.5e-43 177.2 140 68.6
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 9.5e-43 177.2 142 65.5
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.2e-42 176.8 140 68.6
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.6e-42 176.4 140 67.1
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.6e-42 176.4 140 67.1
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.6e-42 176.4 142 64.8
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.6e-42 176.4 146 65.1
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 2.1e-42 176.0 143 66.4
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 2.1e-42 176.0 149 67.8
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 2.8e-42 175.6 139 66.2
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 3.6e-42 175.3 133 69.2
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 3.6e-42 175.3 147 66.0
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 3.6e-42 175.3 145 65.5
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 6.2e-42 174.5 149 67.1
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 6.2e-42 174.5 139 66.9
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 8.1e-42 174.1 137 68.6
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.1e-41 173.7 140 66.4
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.8e-41 172.9 147 66.7
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 2.3e-41 172.6 139 68.3
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 5.2e-41 171.4 135 68.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 8.9e-41 170.6 145 62.1
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.5e-40 169.9 124 72.6
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 3.4e-40 168.7 150 62.7
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 4.4e-40 168.3 147 64.6
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 7.5e-40 167.5 147 64.6
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 1.3e-39 166.8 139 65.5
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.2e-37 160.2 134 65.7
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 3.0e-36 155.6 150 57.3
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 5.6e-35 151.4 132 62.1
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 7.3e-35 151.0 145 55.2
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 9.5e-35 150.6 121 67.8
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.6e-34 149.8 139 56.1
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 4.0e-33 145.2 118 65.3
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 2.9e-31 139.0 145 58.6
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 3.8e-31 138.7 133 54.1
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.2e-29 133.7 129 57.4
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 2.1e-29 132.9 102 73.5
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.0e-28 130.6 107 59.8
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.7e-26 121.7 131 53.4
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.4e-25 119.4 139 50.4
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 3.0e-20 102.4 112 42.9
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.0e-20 102.4 91 67.0
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 2.1e-18 96.3 127 40.9
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.2e-16 90.5 109 50.5
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 5.4e-14 81.6 86 50.0
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 5.6e-11 71.6 49 71.4


User provided reference genes

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