Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 6.5e-29 130.2 72 100.0
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 7.4e-25 116.7 72 87.5
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 2.8e-24 114.8 72 86.1
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 3.7e-24 114.4 72 91.7
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 6.2e-24 113.6 72 90.3
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 6.2e-24 113.6 72 88.9
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 8.2e-24 113.2 72 84.7
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 8.2e-24 113.2 72 84.7
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 8.2e-24 113.2 72 84.7
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 8.2e-24 113.2 72 84.7
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 8.2e-24 113.2 72 84.7
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 8.2e-24 113.2 72 84.7
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 1.8e-15 85.5 66 75.8
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 3.1e-15 84.7 66 74.2
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 2.6e-14 81.6 68 66.2
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 2.6e-14 81.6 66 66.7
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 3.4e-14 81.3 67 62.7
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 5.9e-14 80.5 67 64.2
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 1.0e-13 79.7 67 65.7
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 2.2e-13 78.6 72 56.9
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 2.2e-13 78.6 72 65.3
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 2.9e-13 78.2 68 66.2
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 2.9e-13 78.2 67 61.2
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 3.8e-13 77.8 66 65.2
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 5.0e-13 77.4 72 65.3
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 8.5e-13 76.6 72 65.3
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 8.5e-13 76.6 72 58.3
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 1.1e-12 76.3 66 62.1
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 1.4e-12 75.9 68 66.2
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 1.4e-12 75.9 68 66.2
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 1.4e-12 75.9 68 61.8
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 2.5e-12 75.1 72 58.3
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 4.2e-12 74.3 66 60.6
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 4.2e-12 74.3 67 61.2
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 5.5e-12 73.9 68 60.3
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 7.2e-12 73.6 68 57.4
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 9.4e-12 73.2 66 60.6
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 1.6e-11 72.4 64 60.9
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 1.6e-11 72.4 66 65.2
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 1.6e-11 72.4 67 62.7
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 1.6e-11 72.4 67 61.2
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 1.6e-11 72.4 61 63.9
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 2.1e-11 72.0 67 59.7
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 2.1e-11 72.0 69 55.1
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 2.1e-11 72.0 70 61.4
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 2.1e-11 72.0 72 56.9
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 2.7e-11 71.6 64 60.9
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 2.7e-11 71.6 62 66.1
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 3.6e-11 71.2 60 66.7
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 3.6e-11 71.2 60 66.7
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 3.6e-11 71.2 67 59.7
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 3.6e-11 71.2 67 59.7
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 4.6e-11 70.9 67 61.2
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 4.6e-11 70.9 70 55.7
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 6.1e-11 70.5 67 56.7
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 6.1e-11 70.5 67 58.2
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 6.1e-11 70.5 67 58.2
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 6.1e-11 70.5 62 62.9
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 6.1e-11 70.5 71 56.3
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 7.9e-11 70.1 67 55.2
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 1.0e-10 69.7 66 59.1
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 1.0e-10 69.7 67 56.7
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 1.4e-10 69.3 67 55.2
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 1.8e-10 68.9 67 59.7
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 1.8e-10 68.9 70 55.7
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 1.8e-10 68.9 62 62.9
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 1.8e-10 68.9 67 55.2
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 3.9e-10 67.8 63 66.7
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 5.1e-10 67.4 67 55.2
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 5.1e-10 67.4 70 52.9
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 6.7e-10 67.0 67 53.7
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 6.7e-10 67.0 67 53.7
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 6.7e-10 67.0 67 53.7
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 8.8e-10 66.6 67 53.7
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 8.8e-10 66.6 67 53.7
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 2.0e-09 65.5 67 55.2
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 2.5e-09 65.1 67 55.2
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 3.3e-09 64.7 60 65.0
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 1.4e-07 59.3 63 57.1
EL10Ac6g15349 Beta vulgaris HOM05D007805 ORTHO05D009877 4.1e-07 57.8 65 53.8


User provided reference genes

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