Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 5.2e-208 727.6 408 100.0
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 1.9e-157 559.7 399 77.7
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 9.6e-154 547.4 388 78.4
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 5.8e-151 538.1 388 75.8
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 1.8e-136 490.0 386 69.4
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 1.2e-135 487.3 386 69.4
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 8.7e-131 471.1 387 66.9
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 1.8e-120 436.8 387 64.1
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 4.5e-119 432.2 382 63.9
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 1.7e-118 430.3 387 63.3
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 5.5e-109 398.7 386 60.9
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 5.5e-109 398.7 382 60.5
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 1.6e-103 380.6 414 53.9
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 2.4e-88 330.1 351 55.8
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 2.4e-40 170.6 388 34.0
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 5.6e-37 159.5 403 39.0
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 2.0e-34 151.0 377 34.2
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 2.6e-34 150.6 383 31.6
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 2.1e-31 141.0 406 32.8
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 2.1e-28 131.0 408 32.4
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 2.8e-28 130.6 362 33.1
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 3.7e-28 130.2 363 32.8
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 6.2e-28 129.4 396 31.3
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 8.1e-28 129.0 352 30.7
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 1.1e-27 128.6 342 37.4
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 5.3e-27 126.3 338 38.8
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 6.9e-27 125.9 415 35.2
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 2.0e-26 124.4 402 31.3
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 2.6e-26 124.0 406 30.3
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 3.4e-26 123.6 385 36.9
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 4.5e-26 123.2 407 31.2
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 6.5e-25 119.4 346 31.5
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 4.2e-24 116.7 402 30.1
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 2.7e-23 114.0 369 36.3
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 5.1e-22 109.8 390 30.5
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 8.7e-22 109.0 376 29.8
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 1.1e-21 108.6 391 35.5
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 1.5e-21 108.2 394 30.2
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 5.7e-21 106.3 428 29.7
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 5.7e-21 106.3 244 34.0
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 5.7e-21 106.3 392 29.3
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 2.8e-20 104.0 205 36.1
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 8.2e-20 102.4 405 28.6
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 1.4e-19 101.7 427 28.1
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.4e-19 101.7 313 33.9
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 9.0e-19 99.0 414 28.0
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 1.2e-18 98.6 245 31.8
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 1.5e-18 98.2 402 28.6
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 3.4e-18 97.1 357 33.1
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 4.5e-18 96.7 404 33.7
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 7.6e-18 95.9 277 31.0
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 1.3e-17 95.1 370 26.8
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-17 94.0 470 27.7
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 5.0e-17 93.2 394 32.5
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 1.1e-16 92.0 402 26.4
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 2.5e-16 90.9 409 28.6
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 7.1e-16 89.4 245 31.4
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 7.1e-16 89.4 274 31.0
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 1.2e-15 88.6 411 27.5
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 1.6e-15 88.2 347 28.0
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 6.1e-15 86.3 410 26.3
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 1.0e-14 85.5 390 33.6
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 1.3e-14 85.1 401 27.7
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 1.8e-14 84.7 425 28.2
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 8.7e-14 82.4 384 27.9
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 1.5e-13 81.6 350 28.9
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.9e-13 81.3 296 27.7
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 3.3e-13 80.5 398 25.9
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 4.3e-13 80.1 405 31.9
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 5.7e-13 79.7 420 31.2
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 5.7e-13 79.7 438 32.6
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 2.8e-12 77.4 415 30.1
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 3.7e-12 77.0 409 25.2
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 6.3e-12 76.3 402 27.6
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.1e-11 75.5 421 24.5
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 1.8e-11 74.7 358 26.8
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 2.4e-11 74.3 425 30.6
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 5.3e-11 73.2 403 26.1
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 5.3e-11 73.2 346 27.5
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 9.0e-11 72.4 396 33.3
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 1.2e-10 72.0 403 26.8
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 1.5e-10 71.6 395 26.8
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.6e-10 70.9 380 25.5
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.0e-09 68.9 349 24.9
Zm00001eb273610 Zea mays HOM05D005864 ORTHO05D006770 1.3e-09 68.6 315 29.5
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 8.5e-09 65.9 392 25.5
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 8.5e-09 65.9 172 29.1
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 1.4e-08 65.1 414 26.1
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 3.2e-08 63.9 362 27.3
BcaB08g35049 Brassica carinata HOM05D014762 ORTHO05D006770 4.2e-08 63.5 48 66.7
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 5.5e-08 63.2 364 23.9
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 1.6e-07 61.6 425 24.7
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 2.7e-07 60.8 310 25.5
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 7.9e-07 59.3 406 27.1
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 1.0e-06 58.9 171 33.9
BcaB03g16175 Brassica carinata HOM05D014762 ORTHO05D006770 1.4e-06 58.5 52 61.5
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 6.7e-06 56.2 398 23.1
BcaB01g01277 Brassica carinata HOM05D014762 ORTHO05D006770 8.8e-06 55.8 38 71.1


User provided reference genes

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