Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 2.7e-71 271.9 140 100.0
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 3.0e-54 215.3 140 82.1
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 6.6e-54 214.2 140 80.7
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 2.3e-51 205.7 144 76.4
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 3.4e-50 201.8 141 78.7
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 5.8e-50 201.1 141 77.3
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 5.8e-50 201.1 141 77.3
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 7.6e-50 200.7 143 76.2
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 9.9e-50 200.3 141 77.3
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 9.9e-50 200.3 141 77.3
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 8.4e-49 197.2 141 76.6
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 5.8e-42 174.5 150 69.3
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 8.1e-28 127.5 162 54.3
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 6.5e-17 91.3 209 36.8
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 2.3e-14 82.8 181 39.2
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.9e-13 79.7 182 37.9
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 2.5e-13 79.3 196 33.2
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 4.3e-13 78.6 206 35.4
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 4.3e-13 78.6 171 38.0
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 5.7e-13 78.2 204 36.3
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 5.7e-13 78.2 204 33.3
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 1.6e-12 76.6 185 36.2
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 1.6e-12 76.6 185 36.2
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 2.1e-12 76.3 200 33.5
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 2.1e-12 76.3 175 40.0
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 2.8e-12 75.9 178 36.5
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.8e-12 75.9 200 34.0
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 2.8e-12 75.9 185 35.1
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.7e-12 75.5 200 34.0
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 3.7e-12 75.5 182 35.7
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 4.8e-12 75.1 204 32.8
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 6.3e-12 74.7 153 35.9
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 6.3e-12 74.7 202 33.2
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.1e-11 73.9 200 33.5
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 1.4e-11 73.6 202 32.7
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.4e-11 73.6 209 35.9
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 1.4e-11 73.6 185 35.7
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 1.8e-11 73.2 195 36.9
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 2.4e-11 72.8 211 31.8
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 4.1e-11 72.0 164 36.6
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 4.1e-11 72.0 203 34.0
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 5.3e-11 71.6 205 34.1
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 5.3e-11 71.6 205 34.1
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 5.3e-11 71.6 195 31.8
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 5.3e-11 71.6 193 32.6
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 5.3e-11 71.6 208 33.2
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 6.9e-11 71.2 206 34.0
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 9.0e-11 70.9 168 35.1
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 1.2e-10 70.5 187 34.8
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.2e-10 70.5 180 33.3
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 2.0e-10 69.7 200 33.5
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 2.0e-10 69.7 163 39.3
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 2.0e-10 69.7 178 36.0
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.0e-10 69.7 178 36.0
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.0e-10 69.7 178 36.0
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.0e-10 69.7 178 35.4
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 2.0e-10 69.7 192 35.4
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 2.6e-10 69.3 204 32.8
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.6e-10 69.3 180 35.0
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.6e-10 69.3 168 35.1
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.6e-10 69.3 187 33.2
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 3.4e-10 68.9 165 36.4
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 4.5e-10 68.6 158 34.8
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 5.9e-10 68.2 211 32.2
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.9e-10 68.2 186 34.4
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 5.9e-10 68.2 142 37.3
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 5.9e-10 68.2 187 33.2
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 7.6e-10 67.8 184 37.0
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 7.6e-10 67.8 182 33.0
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.3e-09 67.0 163 33.7
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 1.3e-09 67.0 204 30.4
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.2e-09 66.2 212 33.5
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 2.9e-09 65.9 190 31.1
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 2.9e-09 65.9 163 35.6
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.0e-09 65.1 206 31.6
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 5.0e-09 65.1 188 33.0
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 5.0e-09 65.1 214 31.3
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 5.0e-09 65.1 212 32.5
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 6.5e-09 64.7 213 31.0
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.5e-09 64.7 206 31.6
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 6.5e-09 64.7 212 32.5
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 8.5e-09 64.3 159 37.7
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 8.5e-09 64.3 213 32.4
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.1e-08 63.9 206 31.6
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.1e-08 63.9 151 33.1
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 1.1e-08 63.9 183 34.4
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.4e-08 63.5 186 32.3
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.4e-08 63.5 186 34.4
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 1.9e-08 63.2 80 53.8
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.9e-08 63.2 212 30.7
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 1.9e-08 63.2 209 29.2
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 3.2e-08 62.4 217 31.3
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.2e-08 62.4 180 33.3
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 3.2e-08 62.4 143 35.7
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 4.2e-08 62.0 177 32.8
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 9.3e-08 60.8 61 57.4
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 9.3e-08 60.8 184 29.9
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 9.3e-08 60.8 208 28.4
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 9.3e-08 60.8 188 30.3
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 1.2e-07 60.5 147 36.1
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.6e-07 60.1 62 61.3
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 2.1e-07 59.7 170 33.5
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 2.7e-07 59.3 205 32.7
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 3.6e-07 58.9 213 29.1
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 3.6e-07 58.9 170 32.4
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 4.6e-07 58.5 209 31.6
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 6.1e-07 58.2 137 34.3
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 6.1e-07 58.2 206 32.0
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 6.1e-07 58.2 54 59.3
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 6.1e-07 58.2 174 32.8
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 7.9e-07 57.8 198 30.8
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 1.3e-06 57.0 210 27.6
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 1.3e-06 57.0 178 30.9
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 3.0e-06 55.8 176 31.2
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 3.9e-06 55.5 223 29.6
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 6.7e-06 54.7 50 56.0
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 6.7e-06 54.7 159 32.7
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 6.7e-06 54.7 247 24.7
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 8.7e-06 54.3 183 33.9


User provided reference genes

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