Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 3.3e-231 804.7 398 100.0
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 5.1e-192 674.5 400 86.0
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.6e-190 669.5 397 85.1
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 3.1e-189 665.2 401 82.8
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 4.8e-182 641.3 398 81.7
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 4.8e-182 641.3 398 81.7
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 3.1e-181 638.6 398 80.4
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.7e-179 632.9 407 79.4
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 2.2e-179 632.5 403 79.4
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 3.9e-176 621.7 398 78.6
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 4.3e-167 591.7 402 74.4
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 2.5e-159 565.8 402 70.9
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 9.7e-159 563.9 402 70.9
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.6e-158 563.1 402 70.9
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 3.1e-157 558.9 403 70.2
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 3.4e-156 555.4 402 69.9
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 3.4e-156 555.4 402 71.1
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.4e-149 532.7 333 78.4
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 3.1e-141 505.8 406 66.0
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 6.5e-131 471.5 405 58.3
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.3e-126 457.2 405 56.8
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 6.5e-123 444.9 405 55.8
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 8.5e-123 444.5 406 55.9
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 5.5e-122 441.8 412 55.8
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 5.5e-122 441.8 377 60.2
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 2.7e-121 439.5 400 57.2
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 2.7e-121 439.5 406 55.9
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 4.0e-120 435.6 405 57.3
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 2.6e-119 433.0 411 55.2
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 5.7e-119 431.8 412 54.6
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 9.8e-119 431.0 397 56.9
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.3e-118 430.6 397 56.9
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 4.8e-118 428.7 340 60.3
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.4e-117 427.2 386 56.5
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 1.8e-117 426.8 407 53.6
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 7.0e-117 424.9 422 53.6
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 2.0e-116 423.3 329 62.9
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.7e-115 420.2 397 56.2
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.3e-115 419.9 409 54.0
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.9e-115 419.5 389 54.8
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 5.0e-115 418.7 399 53.6
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 5.0e-115 418.7 396 53.5
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.5e-114 417.2 409 52.6
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.9e-114 416.8 410 51.5
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 5.5e-114 415.2 397 56.2
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 5.5e-114 415.2 329 60.2
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 3.6e-113 412.5 396 55.3
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 3.6e-113 412.5 327 58.7
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 8.0e-113 411.4 406 53.7
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.4e-112 410.6 396 52.5
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 3.0e-112 409.5 327 60.2
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 5.2e-112 408.7 335 59.7
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 6.8e-112 408.3 412 50.5
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 6.8e-112 408.3 394 53.0
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.2e-111 407.5 403 54.3
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 3.4e-111 406.0 329 59.0
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 5.7e-111 405.2 304 68.4
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 5.7e-111 405.2 408 52.0
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 7.5e-111 404.8 400 54.0
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 2.2e-110 403.3 390 53.1
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.4e-109 400.6 399 51.4
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.4e-109 400.6 324 60.2
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 4.1e-109 399.1 312 58.3
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.6e-108 397.1 422 52.1
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.0e-108 396.7 396 51.0
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 2.7e-108 396.4 462 51.7
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 7.8e-108 394.8 315 57.5
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 1.3e-107 394.0 407 50.1
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.9e-107 392.9 347 55.6
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 3.9e-107 392.5 393 50.6
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 3.9e-107 392.5 330 59.7
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.5e-106 389.8 465 47.5
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 2.8e-105 386.3 411 51.8
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 3.6e-105 386.0 403 50.9
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 3.6e-105 386.0 354 53.1
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 2.3e-104 383.3 326 56.7
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.1e-104 382.9 413 47.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 8.9e-104 381.3 337 54.3
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 8.9e-104 381.3 326 55.8
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.9e-102 376.3 335 53.7
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.9e-102 375.6 330 53.9
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 1.1e-101 374.4 314 55.4
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 1.4e-101 374.0 399 49.4
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 3.2e-101 372.9 303 60.4
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.6e-100 370.5 408 47.5
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 1.3e-99 367.5 386 49.7
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.0e-99 366.3 332 53.0
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 5.6e-98 362.1 407 46.4
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 7.3e-98 361.7 336 56.2
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.1e-97 360.1 330 54.8
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.4e-96 357.5 389 50.1
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 1.4e-96 357.5 415 45.5
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 2.3e-96 356.7 393 48.3
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 8.9e-96 354.8 393 48.1
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.3e-94 350.9 392 48.5
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.4e-93 347.4 361 48.2
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 9.2e-93 344.7 389 48.3
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.7e-92 343.2 343 50.7
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 1.3e-91 340.9 358 47.2
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.2e-89 334.3 407 44.7
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.6e-89 334.0 328 50.3
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 2.8e-89 333.2 320 47.8
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 3.1e-88 329.7 368 45.7
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.3e-86 324.3 320 53.1
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 3.6e-81 306.2 419 42.7
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 2.4e-80 303.5 292 55.5
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 1.5e-79 300.8 313 51.8
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 5.4e-77 292.4 278 54.0
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.1e-74 284.6 277 53.8
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.4e-72 277.7 235 57.9
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 5.3e-72 275.8 282 50.7
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 4.9e-70 269.2 370 43.0
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 1.7e-67 260.8 398 38.9
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 9.0e-56 221.9 357 40.6
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 6.7e-51 205.7 279 42.3
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 1.9e-50 204.1 128 77.3
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 9.6e-50 201.8 256 43.8
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.9e-40 169.1 138 60.9
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 1.2e-36 158.3 262 38.5
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 7.4e-34 149.1 337 30.3
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 2.8e-33 147.1 336 27.7
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 6.3e-33 146.0 186 39.2
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.2e-31 141.7 116 58.6
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 2.9e-30 137.1 224 45.1
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 5.1e-27 126.3 227 36.6
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 1.2e-23 115.2 146 39.0
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 1.7e-22 111.3 83 62.7
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.2e-21 107.1 83 61.4
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 5.5e-21 106.3 327 24.2
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 2.7e-20 104.0 255 29.0
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 4.7e-20 103.2 102 52.9
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.4e-16 91.7 85 50.6
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 7.0e-16 89.4 91 47.3
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 6.5e-14 82.8 118 35.6
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 4.0e-11 73.6 85 47.1
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 7.5e-10 69.3 314 22.0
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.7e-07 60.8 70 42.9
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 7.7e-07 59.3 169 27.2
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 7.7e-07 59.3 169 27.2
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.5e-06 56.2 39 53.8


User provided reference genes

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