Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 3.2e-48 194.9 107 100.0
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 7.6e-42 173.7 107 89.7
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 9.9e-42 173.3 107 86.9
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.3e-41 172.9 107 88.8
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.3e-41 172.9 107 90.7
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.7e-41 172.6 107 86.0
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 4.9e-41 171.0 107 85.0
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 2.7e-39 165.2 107 84.1
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 2.7e-39 165.2 107 84.1
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 2.7e-39 165.2 107 84.1
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 6.0e-39 164.1 107 82.2
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 6.0e-39 164.1 107 82.2
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 3.9e-38 161.4 107 82.2
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 6.6e-38 160.6 107 81.3
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-36 155.6 107 79.4
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 2.3e-30 135.6 107 70.1
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 3.0e-30 135.2 108 72.2
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 3.0e-30 135.2 108 72.2
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 3.0e-30 135.2 108 72.2
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 1.9e-29 132.5 105 69.5
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 5.6e-29 131.0 108 70.4
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 7.3e-29 130.6 108 70.4
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.6e-28 129.4 112 67.9
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.1e-28 129.0 108 69.4
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.8e-28 128.6 108 70.4
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.4e-27 125.6 108 69.4
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 2.4e-27 125.6 107 67.3
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 9.0e-27 123.6 107 68.2
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 1.2e-26 123.2 107 66.4
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 2.0e-26 122.5 107 65.4
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.7e-25 119.4 107 65.4
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.2e-25 119.0 111 64.9
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-22 109.8 107 61.7
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 3.0e-22 108.6 107 59.8
BcaB04g19135 Brassica carinata HOM05D004268 ORTHO05D004958 3.3e-21 105.1 107 60.7
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 9.6e-21 103.6 108 59.3
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 4.0e-19 98.2 107 57.0
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 6.9e-19 97.4 106 58.5
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.2e-18 96.7 113 56.6
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.5e-18 96.3 106 58.5
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 7.6e-18 94.0 109 57.8
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 7.6e-18 94.0 111 55.0
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 2.9e-17 92.0 109 54.1
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.8e-17 91.7 109 53.2
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.8e-17 91.7 109 53.2
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.1e-16 90.1 110 50.9
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.9e-16 89.4 107 52.3
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 2.4e-16 89.0 108 54.6
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 3.2e-16 88.6 112 53.6
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 4.2e-16 88.2 109 53.2
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 5.5e-16 87.8 104 53.8
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.5e-16 87.8 104 56.7
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 5.5e-16 87.8 109 55.0
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 5.5e-16 87.8 109 55.0
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 5.5e-16 87.8 111 54.1
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 9.3e-16 87.0 111 51.4
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.6e-15 86.3 104 54.8
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.6e-15 86.3 108 55.6
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.6e-15 86.3 111 53.2
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.1e-15 85.9 107 53.3
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 2.7e-15 85.5 106 54.7
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 3.5e-15 85.1 111 49.5
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.6e-15 84.7 108 55.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 6.0e-15 84.3 111 48.6
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 6.0e-15 84.3 107 52.3
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 7.9e-15 84.0 109 50.5
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.0e-14 83.6 110 48.2
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 1.0e-14 83.6 109 51.4
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.3e-14 83.2 109 52.3
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.8e-14 82.8 110 51.8
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.8e-14 82.8 110 50.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.3e-14 82.4 111 50.5
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.0e-14 82.0 106 49.1
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 3.9e-14 81.6 109 50.5
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.9e-14 81.6 108 47.2
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 5.1e-14 81.3 105 53.3
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 5.1e-14 81.3 106 51.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 6.7e-14 80.9 107 47.7
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 49.1
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.1e-13 80.1 111 50.5
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.5e-13 79.7 109 50.5
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.9e-13 79.3 107 47.7
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.5e-13 79.0 112 53.6
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 2.5e-13 79.0 107 46.7
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 4.3e-13 78.2 109 47.7
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.3e-13 78.2 107 45.8
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 4.3e-13 78.2 115 46.1
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 5.6e-13 77.8 104 47.1
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 5.6e-13 77.8 107 48.6
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 5.6e-13 77.8 107 45.8
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 5.6e-13 77.8 107 45.8
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.4e-13 77.4 105 46.7
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.3e-12 76.6 112 51.8
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.1e-12 75.9 106 48.1
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 2.1e-12 75.9 109 45.0
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 2.8e-12 75.5 107 51.4
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.8e-12 75.5 107 51.4
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 3.7e-12 75.1 108 50.0
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 3.7e-12 75.1 108 50.0
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 4.8e-12 74.7 111 52.3
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.8e-12 74.7 107 51.4
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 4.8e-12 74.7 111 48.6
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 6.2e-12 74.3 98 50.0
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 6.2e-12 74.3 110 47.3
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.2e-12 74.3 107 51.4
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 6.2e-12 74.3 108 49.1
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 6.2e-12 74.3 107 49.5
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 6.2e-12 74.3 109 46.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 6.2e-12 74.3 111 45.9
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 8.2e-12 73.9 104 45.2
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 8.2e-12 73.9 111 48.6
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.1e-11 73.6 109 49.5
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 1.8e-11 72.8 107 47.7
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 2.4e-11 72.4 107 46.7
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 2.4e-11 72.4 107 46.7
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 2.4e-11 72.4 106 44.3
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 6.9e-11 70.9 106 44.3
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.2e-10 70.1 106 41.5
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 2.6e-10 68.9 105 43.8
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 3.4e-10 68.6 110 43.6
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.4e-10 68.6 41 78.0
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 5.8e-10 67.8 104 48.1
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 5.8e-10 67.8 92 48.9
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.2e-09 65.9 109 45.9
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 2.9e-09 65.5 58 60.3
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.9e-09 65.5 114 41.2
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 4.9e-09 64.7 66 53.0
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 4.9e-09 64.7 95 46.3
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 4.9e-09 64.7 113 43.4
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 6.5e-09 64.3 110 45.5
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 8.4e-09 63.9 109 44.0
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.1e-08 63.5 109 46.8
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.5e-08 62.4 109 45.9
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 3.2e-08 62.0 96 44.8
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 3.2e-08 62.0 107 42.1
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 9.3e-08 60.5 108 38.9
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.6e-07 59.7 41 73.2
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.6e-07 59.7 110 40.0
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 2.1e-07 59.3 109 44.0
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 4.6e-07 58.2 108 41.7
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.6e-07 58.2 112 42.9
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 4.6e-07 58.2 122 41.0
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 6.0e-07 57.8 111 45.9
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.0e-06 57.0 114 43.0
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.3e-06 55.8 108 38.9
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 3.9e-06 55.1 111 45.9
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.9e-06 55.1 106 40.6
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 5.1e-06 54.7 110 38.2
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 6.7e-06 54.3 38 68.4


User provided reference genes

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