Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 3.0e-183 645.2 357 100.0
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.0e-167 593.6 355 93.0
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 3.0e-167 592.0 364 92.6
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 4.3e-166 588.2 356 92.1
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 1.6e-165 586.3 355 92.4
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 8.1e-165 583.9 355 91.0
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 1.1e-164 583.6 350 89.1
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 3.1e-164 582.0 355 90.4
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.1e-158 563.5 356 89.6
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.9e-158 562.8 356 89.3
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 3.3e-158 562.0 356 89.0
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 9.6e-158 560.5 356 88.8
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 9.6e-158 560.5 356 88.8
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 2.6e-155 552.4 355 87.9
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 2.6e-155 552.4 355 87.9
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.8e-154 548.5 361 87.3
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 3.2e-153 545.4 358 87.4
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 5.1e-151 538.1 355 86.2
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 8.7e-151 537.3 355 86.2
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 1.9e-142 509.6 333 87.1
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.8e-141 505.0 350 82.6
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 2.2e-138 496.1 356 82.3
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 6.7e-135 484.6 302 91.7
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.1e-133 479.6 312 80.8
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 6.1e-128 461.5 355 67.3
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 1.5e-126 456.8 355 69.6
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.9e-126 456.4 345 68.1
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 9.7e-126 454.1 348 67.5
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.3e-125 453.8 341 69.5
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 1.6e-125 453.4 346 67.3
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 4.8e-125 451.8 354 68.1
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 6.3e-125 451.4 348 67.0
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 6.3e-125 451.4 348 67.0
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.1e-124 450.7 345 67.5
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.8e-124 449.9 348 66.7
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 7.7e-123 444.5 349 70.2
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.0e-122 444.1 347 66.9
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.3e-122 443.7 347 66.9
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.7e-122 443.4 326 70.6
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 1.7e-122 443.4 351 65.8
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.2e-122 443.0 348 67.8
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 2.9e-122 442.6 352 67.6
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.9e-122 442.6 361 66.8
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 5.0e-122 441.8 356 66.9
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 5.0e-122 441.8 354 66.1
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 5.0e-122 441.8 351 70.7
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 1.9e-121 439.9 348 67.5
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 7.2e-121 438.0 338 67.8
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 9.4e-121 437.6 316 71.2
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.2e-120 437.2 344 68.6
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.2e-120 437.2 334 67.1
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.6e-120 436.8 348 67.0
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.6e-120 436.8 357 64.4
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 1.6e-120 436.8 357 64.1
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.6e-120 436.8 348 73.0
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 2.1e-120 436.4 351 64.1
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 2.7e-120 436.0 351 64.1
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 2.7e-120 436.0 359 64.3
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 3.6e-120 435.6 344 67.2
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 3.6e-120 435.6 341 66.9
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 4.6e-120 435.3 355 67.6
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 7.9e-120 434.5 342 65.2
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 1.0e-119 434.1 326 70.6
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.4e-119 433.7 363 66.9
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.4e-119 433.7 346 68.8
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 2.3e-119 433.0 342 66.4
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.3e-119 433.0 357 63.9
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.9e-119 432.2 353 64.3
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.1e-119 431.8 347 64.6
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 5.1e-119 431.8 357 65.8
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 6.7e-119 431.4 354 63.6
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.0e-118 429.9 371 61.2
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.6e-118 429.5 340 65.6
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 4.4e-118 428.7 333 64.9
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 7.4e-118 427.9 363 62.8
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 7.4e-118 427.9 327 69.1
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 9.7e-118 427.6 360 64.2
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 9.7e-118 427.6 356 63.2
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 1.3e-117 427.2 343 64.4
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.3e-117 427.2 371 61.2
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 2.2e-117 426.4 360 62.5
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.2e-117 426.4 353 63.5
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 2.8e-117 426.0 326 67.8
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 3.7e-117 425.6 346 66.2
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 6.3e-117 424.9 360 63.6
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.2e-117 424.5 365 61.9
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.1e-116 424.1 341 64.8
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.4e-116 423.7 338 66.0
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.4e-116 423.7 338 67.2
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.4e-116 423.7 322 66.8
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.4e-116 423.7 333 67.6
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.8e-116 423.3 350 64.6
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 3.1e-116 422.5 354 62.1
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 2.6e-115 419.5 352 65.9
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 3.4e-115 419.1 340 64.1
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 4.5e-115 418.7 354 65.8
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 7.7e-115 417.9 353 62.9
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.0e-114 417.5 340 63.5
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.0e-114 417.5 311 68.2
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.0e-114 417.5 354 63.0
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.3e-114 417.2 329 64.1
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.7e-114 416.8 322 65.2
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 1.7e-114 416.8 311 69.8
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 3.8e-114 415.6 340 62.6
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 5.0e-114 415.2 340 62.4
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 2.5e-113 412.9 315 73.7
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 3.2e-113 412.5 341 64.2
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.2e-113 412.5 352 63.4
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 5.5e-113 411.8 351 64.1
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 7.2e-113 411.4 325 73.2
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.6e-112 410.2 317 65.9
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.6e-112 410.2 351 64.1
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 2.7e-112 409.5 359 61.6
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 5.2e-111 405.2 353 61.8
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 2.0e-110 403.3 354 61.3
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.3e-109 400.6 329 61.7
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.7e-109 400.2 343 60.3
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 8.2e-109 397.9 343 60.6
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.4e-108 396.4 325 64.9
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.2e-106 389.8 291 68.0
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 4.2e-105 385.6 299 64.9
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.2e-105 385.6 349 60.2
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 7.2e-105 384.8 352 59.7
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 7.2e-105 384.8 357 57.1
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 6.1e-104 381.7 453 50.6
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.3e-103 379.8 320 62.5
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 6.7e-103 378.3 347 56.2
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 8.8e-103 377.9 346 56.9
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 2.0e-102 376.7 357 56.0
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 9.7e-102 374.4 265 81.1
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 6.3e-101 371.7 328 61.9
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 2.9e-98 362.8 356 57.9
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 1.5e-94 350.5 332 56.3
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 9.8e-94 347.8 330 53.9
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.2e-93 346.7 284 64.8
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 1.2e-86 324.3 324 52.5
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 3.8e-82 309.3 459 45.1
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 8.9e-79 298.1 314 57.0
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 4.4e-78 295.8 321 50.8
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 2.0e-75 287.0 319 48.6
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.0e-74 284.6 281 56.9
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 9.5e-73 278.1 298 50.0
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 9.5e-73 278.1 208 66.8
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 4.7e-72 275.8 345 46.4
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 6.8e-71 271.9 205 67.8
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 4.6e-67 259.2 211 64.9
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 5.6e-65 252.3 204 62.7
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 9.5e-65 251.5 192 66.1
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 4.7e-64 249.2 212 63.7
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.1e-63 246.5 188 64.9
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 1.9e-60 237.3 241 54.4
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 1.1e-55 221.5 318 41.2
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 4.2e-44 183.0 141 64.5
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.7e-43 180.3 132 66.7
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 3.6e-40 169.9 139 62.6
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 7.9e-35 152.1 143 56.6
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 5.6e-33 146.0 124 64.5
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 1.0e-21 108.6 212 31.1
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 2.2e-21 107.5 101 57.4
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 2.5e-20 104.0 108 55.6
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 4.3e-17 93.2 247 27.5
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.0e-10 70.5 92 40.2
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 3.3e-09 67.0 38 94.7
A03p67900 Brassica napus HOM05D006735 ORTHO05D009558 1.5e-06 58.2 62 59.7


User provided reference genes

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