Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.2e-128 463.4 277 100.0
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.3e-127 459.1 277 93.9
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 92.1
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 9.2e-124 447.2 277 91.0
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 9.2e-124 447.2 277 91.0
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 7.8e-123 444.1 274 91.2
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 3.0e-122 442.2 274 90.9
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 88.1
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.1e-121 440.3 275 91.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.9e-121 439.5 275 90.9
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.9e-121 439.5 275 90.9
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 2.3e-119 432.6 280 89.6
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.9e-114 415.2 277 84.5
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.3e-113 412.1 277 84.5
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.3e-113 411.0 277 83.4
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.6e-112 409.8 277 83.0
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.6e-112 409.8 277 83.0
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.6e-112 408.7 277 83.0
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 6.2e-112 407.9 277 81.9
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.1e-111 407.1 277 83.4
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.1e-111 407.1 277 81.9
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.1e-111 407.1 276 82.6
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.1e-111 407.1 277 82.3
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.4e-111 406.8 277 81.9
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.8e-111 406.4 277 83.0
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.8e-111 406.4 277 80.9
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.8e-111 406.4 277 82.3
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.8e-111 406.4 277 82.3
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.8e-111 406.4 277 81.2
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 2.3e-111 406.0 277 82.7
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.1e-111 405.6 277 81.9
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 4.0e-111 405.2 277 82.3
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 6.8e-111 404.4 274 80.7
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 8.9e-111 404.1 277 81.2
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 8.9e-111 404.1 277 82.3
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.2e-110 403.7 277 81.2
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.2e-110 403.7 277 81.9
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.5e-110 403.3 277 80.1
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.6e-110 402.5 277 81.9
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.6e-110 402.5 277 80.1
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.4e-110 402.1 277 81.6
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 3.4e-110 402.1 277 81.2
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.8e-110 401.4 277 81.6
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 5.8e-110 401.4 277 80.9
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 7.5e-110 401.0 277 80.5
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 9.8e-110 400.6 277 80.5
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.3e-109 400.2 278 81.7
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 1.7e-109 399.8 277 81.2
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.2e-109 399.4 276 82.2
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 2.9e-109 399.1 277 80.9
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.9e-109 399.1 277 80.1
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 4.9e-109 398.3 277 79.8
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 4.9e-109 398.3 277 80.5
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 6.4e-109 397.9 277 80.5
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 8.3e-109 397.5 277 80.9
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.3e-109 397.5 277 79.4
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 8.3e-109 397.5 277 80.1
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 1.1e-108 397.1 277 81.9
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.9e-108 396.4 277 79.1
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.2e-108 395.6 277 79.4
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.1e-108 395.2 277 79.1
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 5.4e-108 394.8 283 79.2
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 7.1e-108 394.4 277 78.3
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 9.2e-108 394.0 277 79.1
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.2e-107 393.7 277 79.4
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.2e-107 393.7 277 78.7
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 6.0e-107 391.3 277 77.6
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 7.8e-107 391.0 277 78.0
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.3e-106 390.2 277 77.3
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 2.3e-106 389.4 277 81.2
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 8.6e-106 387.5 277 78.3
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 3.3e-105 385.6 277 76.5
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 3.3e-105 385.6 261 83.5
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.8e-104 382.5 261 81.6
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.8e-104 382.5 261 81.6
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.8e-104 382.5 277 78.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.6e-104 382.1 321 70.1
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 8.1e-104 380.9 278 79.1
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.5e-102 376.7 318 69.2
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 4.4e-102 375.2 301 71.1
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.3e-101 373.6 277 76.5
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.4e-100 370.2 270 78.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.9e-100 369.8 272 76.1
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 3.2e-100 369.0 277 75.1
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 3.2e-100 369.0 281 76.9
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.4e-100 368.2 275 75.3
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 7.1e-100 367.9 274 77.7
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.0e-99 364.8 320 67.2
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 6.0e-99 364.8 277 74.7
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.0e-98 364.0 277 71.5
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.7e-98 363.2 278 74.5
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 8.6e-98 360.9 278 72.3
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 2.5e-97 359.4 318 62.6
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 3.3e-97 359.0 264 76.5
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 7.3e-97 357.8 278 73.0
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 3.6e-96 355.5 256 77.3
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 3.6e-96 355.5 299 65.9
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 3.6e-96 355.5 281 73.7
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.4e-95 352.8 269 71.7
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 8.9e-95 350.9 275 72.0
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.9e-93 345.9 358 57.0
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.9e-93 345.9 262 74.0
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.1e-92 344.0 256 77.0
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.0e-90 337.4 230 82.2
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.3e-90 336.3 260 73.8
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 2.4e-87 326.2 331 61.9
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.9e-87 324.7 250 80.0
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.9e-87 324.7 250 80.0
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.0e-86 323.2 277 66.4
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 5.8e-86 321.6 230 78.3
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 4.9e-85 318.5 265 69.4
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.6e-83 313.5 222 80.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 6.0e-83 311.6 283 65.0
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.0e-82 310.8 277 60.6
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.3e-82 310.5 222 80.2
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 6.6e-82 308.1 281 64.1
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 8.7e-82 307.8 274 60.2
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 8.1e-80 301.2 274 65.3
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.0e-79 297.7 274 65.0
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.6e-75 287.0 313 58.8
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 1.3e-74 283.9 224 74.1
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 5.7e-65 251.9 258 56.6
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 5.9e-62 241.9 187 73.8
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 9.3e-60 234.6 278 50.7
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.3e-58 230.7 274 49.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 9.7e-57 224.6 181 81.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.0e-53 214.5 138 81.2
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 3.0e-50 203.0 132 78.8
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 2.0e-49 200.3 156 67.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.5e-46 189.1 300 48.0
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.2e-45 186.8 145 76.6
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.0e-42 176.4 129 72.1
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.8e-40 169.9 90 94.4
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 3.7e-40 169.5 106 81.1
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 6.3e-40 168.7 97 87.6
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 6.7e-34 148.7 81 91.4
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.1e-31 141.4 154 55.8
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.9e-28 130.6 80 81.2
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.2e-28 129.4 74 89.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.2e-28 129.4 74 89.2
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.1e-27 127.1 80 76.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.1e-20 104.8 257 35.0
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 5.5e-20 102.4 155 45.2
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 6.1e-19 99.0 149 45.6
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-18 97.4 123 50.4
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.2e-17 94.7 147 38.8
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.6e-17 93.6 148 39.9
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 9.8e-17 91.7 154 40.3
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 3.7e-16 89.7 153 38.6
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.4e-15 87.8 57 73.7
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-15 87.4 64 89.1
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.0e-15 85.5 147 39.5
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.9e-14 82.4 63 82.5
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 7.7e-14 82.0 73 65.8
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.8e-13 79.7 46 84.8
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.1e-12 78.2 46 82.6
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.1e-11 72.4 157 38.2
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.0e-11 72.0 156 37.2
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.0e-10 70.1 264 31.1
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 5.2e-10 69.3 38 84.2
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 6.8e-10 68.9 43 76.7
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.5e-09 65.5 140 41.4


User provided reference genes

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