Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 5.3e-179 630.9 325 100.0
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 4.6e-159 564.7 342 87.7
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 1.0e-150 537.0 344 84.6
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 5.3e-147 524.6 341 82.4
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 3.2e-144 515.4 343 81.0
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 3.9e-142 508.4 343 79.9
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 2.0e-138 496.1 343 78.1
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 1.7e-137 493.0 343 77.6
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 9.7e-133 477.2 345 77.1
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 1.1e-131 473.8 344 75.9
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 1.1e-131 473.8 344 75.9
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 5.7e-125 451.4 347 72.9
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 2.8e-116 422.5 344 70.1
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 1.2e-103 380.6 348 61.5
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 2.3e-89 333.2 349 56.2
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 3.0e-89 332.8 346 56.9
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 4.3e-88 328.9 347 56.2
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 5.6e-88 328.6 352 55.7
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 1.5e-85 320.5 348 54.0
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 2.0e-85 320.1 350 53.7
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 3.7e-84 315.8 353 53.5
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.9e-83 313.5 348 54.3
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 2.4e-83 313.2 348 56.0
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 2.4e-83 313.2 347 53.9
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 4.1e-83 312.4 344 54.9
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 7.1e-83 311.6 319 56.4
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 9.2e-83 311.2 344 55.5
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 7.8e-82 308.1 351 53.3
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 1.0e-81 307.8 348 54.6
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 1.0e-81 307.8 343 55.1
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 1.3e-81 307.4 354 53.7
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 1.3e-81 307.4 354 53.7
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 1.7e-81 307.0 282 60.3
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 5.1e-81 305.4 348 54.3
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 8.6e-81 304.7 312 55.8
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 8.6e-81 304.7 350 52.6
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 1.1e-80 304.3 339 55.8
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 1.1e-80 304.3 347 54.2
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 1.5e-80 303.9 344 52.6
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 5.6e-80 302.0 309 56.3
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 9.5e-80 301.2 345 53.6
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 1.2e-79 300.8 352 52.6
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 1.6e-79 300.4 352 52.8
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 2.1e-79 300.1 356 51.4
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.1e-79 300.1 346 50.9
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 3.6e-79 299.3 353 53.5
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 6.2e-79 298.5 320 54.7
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 8.1e-79 298.1 351 51.6
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 1.1e-78 297.7 347 51.6
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 1.4e-78 297.4 340 51.8
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 2.3e-78 296.6 277 61.0
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 4.0e-78 295.8 274 59.5
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 5.2e-78 295.4 342 53.8
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 5.2e-78 295.4 347 52.7
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 1.2e-77 294.3 358 52.5
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 2.6e-77 293.1 348 51.7
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 5.8e-77 292.0 343 53.1
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 7.6e-77 291.6 343 52.8
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 2.2e-76 290.0 343 52.2
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 4.9e-76 288.9 341 52.2
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 1.4e-75 287.3 274 57.7
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 3.2e-75 286.2 343 50.1
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 9.2e-75 284.6 347 52.2
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 1.2e-74 284.3 352 50.3
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 2.7e-74 283.1 337 50.1
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 4.6e-74 282.3 345 50.1
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 4.6e-74 282.3 348 51.1
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 7.8e-74 281.6 317 53.9
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 7.8e-74 281.6 317 53.9
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 7.8e-74 281.6 350 50.9
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 1.0e-73 281.2 278 56.5
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 2.3e-73 280.0 341 51.3
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 2.3e-73 280.0 323 53.9
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 1.1e-72 277.7 345 50.1
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 3.3e-72 276.2 355 48.2
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 4.3e-72 275.8 320 50.6
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 7.3e-72 275.0 272 54.4
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 7.3e-72 275.0 304 53.9
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 6.2e-71 271.9 365 47.4
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 4.4e-69 265.8 279 52.3
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 9.9e-69 264.6 353 48.2
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 4.9e-68 262.3 353 49.0
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 1.7e-65 253.8 349 45.8
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.3e-63 247.7 277 53.8
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 6.2e-63 245.4 304 49.7
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 1.1e-62 244.6 326 47.5
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 1.1e-59 234.6 312 45.8
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 8.7e-57 224.9 209 58.4
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 7.4e-56 221.9 310 43.9
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 1.1e-54 218.0 327 43.1
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 1.2e-53 214.5 349 40.4
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 1.0e-49 201.4 132 77.3
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 8.1e-47 191.8 136 69.9
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 3.4e-45 186.4 257 49.4
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 1.3e-39 167.9 170 54.1
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 2.8e-39 166.8 236 49.6
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 3.4e-37 159.8 272 34.9
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 4.2e-35 152.9 124 62.1
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 2.6e-29 133.7 105 63.8
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 7.2e-27 125.6 204 45.6
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 1.3e-23 114.8 274 32.5
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 6.3e-23 112.5 266 30.5
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.0e-17 95.1 208 28.8
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 1.3e-15 88.2 109 51.4
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 7.0e-14 82.4 100 47.0
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 2.6e-13 80.5 280 26.1
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 8.0e-10 68.9 245 24.9


User provided reference genes

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