Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 5.8e-248 860.5 465 100.0
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 1.3e-202 709.9 447 85.9
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 3.7e-202 708.4 447 85.5
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 1.1e-190 670.2 450 81.3
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 7.1e-169 597.8 444 73.4
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.2e-136 490.7 502 62.9
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.8e-135 486.9 455 67.7
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 3.0e-127 459.5 445 59.8
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 1.6e-125 453.8 568 56.2
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 2.8e-125 453.0 566 55.7
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 2.8e-125 453.0 566 55.7
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 4.1e-124 449.1 566 55.5
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 7.2e-121 438.3 467 60.8
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 5.0e-114 415.6 615 50.2
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 5.2e-79 299.3 469 44.8
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 6.3e-77 292.4 474 43.7
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 3.8e-74 283.1 454 42.5
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 2.3e-71 273.9 470 43.0
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 1.7e-69 267.7 495 40.2
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 2.9e-69 266.9 477 39.4
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 1.8e-68 264.2 517 37.7
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 2.4e-68 263.8 479 41.5
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 2.0e-67 260.8 461 42.1
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.7e-67 260.4 461 42.3
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 7.8e-67 258.8 472 41.7
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 6.6e-66 255.8 466 41.6
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 1.1e-65 255.0 548 36.3
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 4.3e-65 253.1 405 43.5
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 2.8e-64 250.4 453 40.2
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.4e-63 248.1 478 39.7
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 4.9e-61 239.6 466 38.6
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 1.9e-60 237.7 465 39.8
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 2.4e-60 237.3 503 37.0
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 3.2e-60 236.9 515 36.5
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 4.1e-60 236.5 461 41.0
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 2.3e-58 230.7 521 35.9
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 1.5e-57 228.0 462 39.4
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 2.5e-57 227.3 472 39.2
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 3.3e-57 226.9 519 36.4
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.2e-56 224.9 506 36.4
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 3.6e-56 223.4 498 35.5
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.2e-54 218.4 478 38.3
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 1.2e-54 218.4 453 38.6
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 3.4e-54 216.9 471 36.9
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 5.8e-54 216.1 483 35.6
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 2.2e-53 214.2 473 38.9
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 2.9e-53 213.8 462 39.2
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 3.7e-53 213.4 546 34.8
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 4.9e-53 213.0 286 45.1
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 4.1e-52 209.9 526 35.0
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 5.4e-52 209.5 513 34.7
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 7.1e-52 209.1 476 36.1
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 6.0e-51 206.1 343 42.0
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.9e-50 203.4 514 34.4
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.9e-50 203.4 514 34.4
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.5e-49 201.4 544 32.9
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 1.9e-49 201.1 413 38.7
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 7.3e-49 199.1 452 35.6
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 1.6e-48 198.0 453 36.6
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 3.6e-48 196.8 342 39.5
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 6.2e-48 196.1 408 37.0
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 1.8e-47 194.5 476 34.7
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 2.3e-47 194.1 457 35.4
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 4.4e-46 189.9 356 40.2
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 4.4e-46 189.9 552 34.1
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 7.6e-46 189.1 499 32.7
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 7.6e-46 189.1 559 32.4
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 3.8e-45 186.8 483 36.0
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 6.4e-45 186.0 400 37.8
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 6.4e-45 186.0 511 34.1
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 8.4e-45 185.7 552 31.9
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.1e-44 185.3 430 38.1
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.9e-44 184.5 433 34.9
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.4e-44 184.1 439 36.7
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 3.2e-44 183.7 440 36.8
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 5.4e-44 183.0 534 32.6
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 7.1e-44 182.6 401 38.2
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 9.2e-44 182.2 498 33.3
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.6e-43 181.4 588 31.0
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 2.1e-43 181.0 506 35.4
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 2.1e-43 181.0 511 33.1
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 3.5e-43 180.3 467 34.7
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 7.8e-43 179.1 522 33.7
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.0e-42 178.7 498 33.5
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 1.7e-42 177.9 542 31.9
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 2.3e-42 177.6 473 35.1
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 3.0e-42 177.2 486 33.3
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 1.9e-41 174.5 342 37.1
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 3.3e-41 173.7 552 31.2
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 7.3e-41 172.6 534 31.5
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.6e-40 171.4 439 32.3
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 2.1e-40 171.0 510 33.5
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 4.7e-40 169.9 375 36.5
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 1.1e-39 168.7 310 35.8
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 1.8e-39 167.9 363 37.7
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 5.2e-39 166.4 410 34.6
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 9.9e-38 162.2 534 30.9
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 2.2e-37 161.0 567 30.5
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 8.4e-37 159.1 397 34.8
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 2.4e-36 157.5 353 35.7
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 6.0e-35 152.9 327 34.6
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 1.1e-33 148.7 378 33.9
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 7.3e-33 146.0 324 32.4
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 9.6e-33 145.6 485 32.0
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 2.1e-27 127.9 341 34.3
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 8.7e-26 122.5 283 39.6
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 1.5e-25 121.7 433 30.3
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.1e-24 117.9 435 32.0
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 2.0e-22 111.3 418 29.2
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 7.6e-22 109.4 165 38.8
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 2.2e-21 107.8 506 29.8
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 7.9e-19 99.4 196 33.7
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.8e-18 98.2 244 33.2
BcaB04g18327 Brassica carinata HOM05D000073 ORTHO05D000033 9.0e-15 85.9 105 54.3
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.2e-11 75.5 172 33.7
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 1.5e-09 68.6 84 46.4
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 1.8e-07 61.6 54 50.0


User provided reference genes

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