Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 2.6e-228 795.0 399 100.0
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 7.3e-191 670.6 396 86.4
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 5.3e-181 637.9 397 81.4
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 1.4e-178 629.8 399 78.7
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 1.9e-178 629.4 399 78.9
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 4.2e-178 628.2 399 78.2
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 3.5e-177 625.2 399 79.7
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 1.9e-170 602.8 399 75.9
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 3.3e-167 592.0 399 74.9
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 9.7e-167 590.5 367 80.1
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 5.9e-156 554.7 345 80.0
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 5.5e-154 548.1 394 68.8
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 1.2e-148 530.4 321 82.9
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 3.5e-132 475.7 393 60.8
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 1.1e-130 470.7 389 60.2
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 1.0e-128 464.2 389 60.2
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 1.0e-128 464.2 399 58.4
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 8.8e-128 461.1 390 58.7
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 1.5e-127 460.3 390 60.3
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 1.3e-126 457.2 399 60.2
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 2.8e-126 456.1 390 58.5
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 3.7e-126 455.7 387 59.9
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 6.3e-126 454.9 390 58.5
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 6.3e-126 454.9 393 58.5
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 1.8e-125 453.4 390 57.9
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 4.1e-125 452.2 393 58.0
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 9.1e-125 451.1 399 58.4
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 7.7e-124 448.0 402 57.0
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 2.5e-122 443.0 389 57.8
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 5.6e-122 441.8 395 57.5
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 8.0e-121 438.0 402 58.0
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 2.0e-119 433.3 399 57.6
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 2.2e-118 429.9 386 56.2
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 4.9e-118 428.7 386 56.0
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 8.3e-118 427.9 396 56.6
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 1.1e-117 427.6 402 53.0
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 2.4e-117 426.4 386 57.0
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 2.0e-116 423.3 396 55.8
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 2.7e-116 422.9 406 53.7
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 2.7e-116 422.9 386 55.2
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 3.5e-116 422.5 395 54.2
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 1.0e-115 421.0 386 56.0
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 1.0e-115 421.0 402 54.5
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 1.3e-115 420.6 396 56.3
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 2.3e-115 419.9 402 53.7
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 5.0e-115 418.7 386 54.9
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 6.6e-115 418.3 398 54.0
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 2.5e-114 416.4 397 53.1
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 1.2e-113 414.1 390 55.1
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 1.6e-113 413.7 393 52.7
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 6.2e-113 411.8 395 54.7
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 1.0e-112 411.0 386 55.7
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 1.0e-112 411.0 390 52.6
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 3.1e-112 409.5 387 54.0
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 8.9e-112 407.9 389 54.2
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 1.2e-111 407.5 393 55.5
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 1.3e-110 404.1 345 58.3
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 3.7e-110 402.5 398 52.0
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 6.4e-110 401.7 362 55.8
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 2.4e-109 399.8 369 57.7
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 3.2e-109 399.4 392 54.3
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 4.1e-109 399.1 389 52.4
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 9.2e-109 397.9 390 53.3
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 1.6e-108 397.1 418 51.7
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 2.0e-108 396.7 397 50.1
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 1.0e-107 394.4 393 51.1
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 3.9e-107 392.5 398 53.5
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 8.6e-107 391.3 318 60.4
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 1.1e-106 391.0 387 51.4
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 1.5e-106 390.6 394 50.8
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 1.5e-106 390.6 395 51.1
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 4.3e-106 389.0 345 55.7
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 1.1e-104 384.4 393 51.1
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 6.8e-104 381.7 342 54.7
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 9.8e-103 377.9 388 50.3
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 9.8e-103 377.9 395 48.9
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 8.3e-102 374.8 361 52.1
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 1.2e-97 360.9 349 53.3
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 3.6e-97 359.4 322 59.0
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 4.0e-96 355.9 218 82.6
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 8.9e-96 354.8 387 50.9
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 2.9e-94 349.7 386 49.7
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 9.2e-93 344.7 395 49.9
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 2.1e-92 343.6 321 54.5
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 1.0e-91 341.3 318 56.6
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 2.1e-89 333.6 427 42.2
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 3.4e-87 326.2 299 55.5
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 3.4e-79 299.7 388 43.0
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 6.0e-76 288.9 267 56.6
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 1.3e-75 287.7 295 51.9
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 3.9e-75 286.2 294 49.3
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 2.1e-73 280.4 373 39.1
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 2.8e-73 280.0 279 50.9
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 1.4e-72 277.7 240 56.2
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 1.8e-67 260.8 267 52.4
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 1.7e-62 244.2 239 52.3
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 1.7e-54 217.6 234 49.6
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 7.4e-50 202.2 267 42.7
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 3.7e-49 199.9 397 34.3
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-47 193.4 378 34.9
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 2.6e-39 167.2 368 30.7
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 3.8e-38 163.3 199 42.2
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 1.1e-34 151.8 278 35.3
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 7.7e-31 139.0 99 68.7
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 7.2e-29 132.5 237 35.9
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 5.2e-19 99.8 134 39.6
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 2.6e-18 97.4 90 53.3
Zm00001eb030810 Zea mays HOM05D007013 ORTHO05D008999 1.6e-12 78.2 95 41.1
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 2.2e-09 67.8 102 39.2
MELO3C025412.2 Cucumis melo HOM05D007013 ORTHO05D029173 4.5e-07 60.1 57 50.9
MELO3C029988.2 Cucumis melo HOM05D007013 ORTHO05D029173 5.9e-07 59.7 58 51.7
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 5.9e-07 59.7 89 36.0
MELO3C022571.2 Cucumis melo HOM05D016993 ORTHO05D019020 7.7e-07 59.3 58 51.7
Rhsim06G0218700 Rhododendron simsii HOM05D007013 ORTHO05D008999 5.0e-06 56.6 48 52.1
MELO3C029511.2 Cucumis melo HOM05D007013 ORTHO05D029173 8.6e-06 55.8 56 50.0


User provided reference genes

Program Settings