Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.1e-131 473.4 261 100.0
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.0e-100 370.5 266 79.3
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 4.3e-99 365.2 268 79.5
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.8e-97 359.8 267 78.3
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 5.3e-97 358.2 264 76.9
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.2e-96 357.1 261 75.1
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 8.4e-95 350.9 266 75.6
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 8.4e-95 350.9 266 75.9
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 8.4e-95 350.9 266 75.6
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 6.0e-93 344.7 264 75.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 3.3e-91 339.0 267 76.0
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 5.3e-89 331.6 266 74.4
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.7e-87 326.6 250 76.4
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.3e-55 220.7 174 67.2
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 5.4e-49 198.7 251 51.0
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 7.0e-49 198.4 262 52.7
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.5e-48 196.1 262 52.3
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 3.5e-48 196.1 256 52.7
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 5.9e-48 195.3 250 48.8
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.3e-47 194.1 248 46.8
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.7e-47 193.7 249 49.4
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.2e-47 193.4 255 48.2
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 8.5e-47 191.4 262 52.7
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.5e-46 190.7 250 50.0
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.9e-46 190.3 255 49.0
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.9e-46 190.3 253 45.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.9e-46 190.3 249 47.0
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 3.2e-46 189.5 253 45.5
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 4.2e-46 189.1 262 48.1
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 5.5e-46 188.7 273 49.5
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 5.5e-46 188.7 264 45.8
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 5.5e-46 188.7 250 47.6
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 7.2e-46 188.3 253 52.6
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.6e-45 187.2 250 48.4
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.6e-45 187.2 245 50.2
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.6e-45 187.2 245 50.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 2.1e-45 186.8 260 46.2
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 3.6e-45 186.0 268 47.8
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.7e-45 185.7 251 45.4
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 4.7e-45 185.7 271 46.5
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 6.1e-45 185.3 255 51.0
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 6.1e-45 185.3 259 49.0
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.0e-44 184.5 254 47.6
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.3e-44 183.3 277 48.7
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.0e-44 183.0 267 47.9
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.2e-44 182.2 267 47.9
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 8.8e-44 181.4 250 50.4
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.8e-44 181.4 258 47.3
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.2e-43 181.0 254 47.2
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.2e-43 181.0 262 45.0
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.5e-43 180.6 258 47.7
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.5e-43 180.6 256 46.1
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 2.0e-43 180.3 251 47.8
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.3e-42 177.6 247 47.8
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.7e-42 177.2 260 48.1
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.7e-42 177.2 267 47.2
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 2.2e-42 176.8 264 46.2
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 2.8e-42 176.4 251 47.8
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 3.7e-42 176.0 251 50.2
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.9e-42 175.6 253 47.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 4.9e-42 175.6 249 51.4
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 6.3e-42 175.3 262 50.8
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 6.3e-42 175.3 262 45.0
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 8.3e-42 174.9 253 47.8
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-41 174.5 255 43.5
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.4e-41 174.1 254 43.7
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.8e-41 173.7 253 48.6
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.8e-41 173.7 264 48.5
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.8e-41 173.7 257 45.5
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.4e-41 173.3 264 45.1
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 4.1e-41 172.6 255 46.3
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 9.2e-41 171.4 262 45.0
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.2e-40 171.0 269 42.4
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.6e-40 170.6 251 41.4
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.6e-40 170.6 250 46.8
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.5e-40 169.1 248 45.2
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 4.5e-40 169.1 261 43.7
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 7.7e-40 168.3 255 43.1
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 7.7e-40 168.3 229 50.7
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.3e-39 167.5 254 44.5
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.3e-39 167.5 256 43.4
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 1.7e-39 167.2 179 50.8
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.3e-39 166.8 256 45.3
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.3e-39 166.8 256 44.9
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.3e-39 166.8 280 42.5
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 3.8e-39 166.0 170 52.9
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.0e-39 165.6 226 45.6
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 5.0e-39 165.6 248 48.4
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 6.6e-39 165.2 251 43.4
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 8.6e-39 164.9 263 45.2
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.1e-38 164.5 255 42.7
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.5e-38 163.3 255 40.0
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 2.5e-38 163.3 168 50.6
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.2e-37 161.0 257 42.0
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.6e-37 160.6 252 42.1
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.1e-37 160.2 252 43.3
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 3.6e-37 159.5 255 45.9
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.6e-37 159.5 248 43.5
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 4.7e-37 159.1 246 43.5
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.7e-37 159.1 190 52.6
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.4e-36 157.5 256 38.3
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.0e-36 156.4 159 52.8
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 4.0e-36 156.0 255 42.4
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 5.2e-36 155.6 249 43.4
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 6.8e-36 155.2 259 44.8
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 2.6e-35 153.3 244 43.9
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.4e-35 152.9 170 48.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 5.7e-35 152.1 256 43.4
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 1.3e-34 151.0 263 44.9
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 2.9e-34 149.8 310 39.4
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 4.9e-34 149.1 250 45.2
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 4.6e-32 142.5 261 41.4
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.7e-31 140.6 281 39.5
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.7e-31 140.6 247 41.3
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 3.9e-31 139.4 250 42.0
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 5.0e-31 139.0 175 49.7
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.5e-30 137.5 255 37.6
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.5e-30 137.5 253 41.5
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 4.3e-30 136.0 275 40.7
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 9.5e-30 134.8 270 39.6
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 3.4e-27 126.3 160 46.9
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 7.0e-25 118.6 145 46.2
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 7.0e-25 118.6 363 32.2
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 3.3e-22 109.8 150 47.3
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 3.3e-22 109.8 255 41.2
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.2e-21 107.8 242 34.3
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 6.2e-21 105.5 131 48.1
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 8.1e-21 105.1 188 36.7
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.1e-20 104.8 124 48.4
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.7e-18 97.4 198 33.8
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 4.9e-18 95.9 107 44.9
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 2.1e-16 90.5 206 36.4
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.6e-16 89.4 153 37.9
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.3e-15 87.8 129 53.5
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.3e-15 87.8 124 41.1
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 3.9e-15 86.3 211 32.7
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.5e-14 83.6 134 50.7
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.3e-14 83.2 121 39.7
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.8e-13 80.1 62 59.7
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.8e-13 80.1 247 31.2
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 3.6e-13 79.7 153 41.8
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 6.2e-13 79.0 163 36.8
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.6e-11 73.6 107 52.3
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 3.8e-10 69.7 59 61.0
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 9.6e-06 55.1 35 68.6
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 9.6e-06 55.1 35 68.6


User provided reference genes

Program Settings