Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 9.1e-180 634.0 478 100.0
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 7.3e-161 571.2 473 94.1
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 6.2e-160 568.2 473 92.0
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 6.8e-159 564.7 476 90.5
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 7.1e-148 528.1 474 88.2
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 5.1e-146 521.9 475 88.0
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 8.9e-143 511.1 475 86.5
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 9.9e-142 507.7 477 86.8
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 3.7e-141 505.8 462 87.4
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 5.4e-140 501.9 462 87.2
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 9.2e-140 501.1 477 84.9
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 9.2e-140 501.1 477 84.9
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 1.7e-138 496.9 477 83.6
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 5.1e-138 495.4 477 83.6
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 1.5e-137 493.8 462 86.1
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 2.7e-91 340.1 211 82.5
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 6.8e-66 255.8 460 55.0
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 1.2e-65 255.0 477 39.4
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 8.3e-64 248.8 464 59.1
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 5.0e-61 239.6 455 45.3
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 8.5e-61 238.8 454 48.7
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 3.2e-60 236.9 462 56.5
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.6e-59 234.6 461 61.4
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 2.1e-59 234.2 461 54.9
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 2.1e-59 234.2 465 56.3
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 1.0e-58 231.9 466 57.1
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 1.8e-58 231.1 463 59.0
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 1.8e-58 231.1 462 56.3
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 2.3e-58 230.7 463 53.6
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 3.0e-58 230.3 462 55.8
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 6.8e-58 229.2 458 55.2
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 2.0e-57 227.6 468 57.1
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 4.4e-57 226.5 470 60.2
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 6.3e-56 222.6 479 57.0
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 1.1e-55 221.9 480 55.6
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 2.4e-55 220.7 475 59.8
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 3.1e-55 220.3 476 51.5
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 9.2e-55 218.8 463 44.1
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 5.9e-54 216.1 464 41.6
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 7.7e-54 215.7 463 58.1
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 7.7e-54 215.7 466 57.9
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 8.6e-53 212.2 447 56.8
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 1.1e-52 211.8 465 58.1
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 6.1e-51 206.1 460 58.9
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 6.1e-51 206.1 463 59.4
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 1.4e-50 204.9 465 58.1
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 6.8e-50 202.6 453 56.7
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 2.0e-49 201.1 453 56.3
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 4.4e-49 199.9 453 59.6
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 9.8e-49 198.7 464 48.5
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.2e-48 197.6 467 47.3
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.4e-47 194.9 463 57.7
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 3.2e-47 193.7 465 51.6
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 7.8e-46 189.1 462 57.8
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 1.3e-45 188.3 472 56.1
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 1.5e-44 184.9 465 44.1
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 4.3e-44 183.3 476 30.9
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 2.1e-43 181.0 481 57.6
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 2.1e-43 181.0 343 53.6
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 6.2e-43 179.5 344 55.5
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 1.0e-42 178.7 474 50.8
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 4.4e-41 173.3 444 57.4
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 4.4e-41 173.3 354 62.7
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 2.9e-40 170.6 456 54.8
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 3.7e-40 170.2 438 45.7
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 1.9e-39 167.9 470 56.4
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 7.0e-39 166.0 463 52.7
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 7.8e-38 162.5 462 52.8
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 1.0e-37 162.2 458 53.5
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 8.6e-37 159.1 457 43.1
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 1.5e-36 158.3 454 38.5
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 2.1e-35 154.5 348 51.7
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 1.8e-34 151.4 349 50.7
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 6.8e-34 149.4 459 53.4
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 3.7e-32 143.7 214 41.6
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 6.4e-32 142.9 355 32.7
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 1.1e-28 132.1 438 57.3
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 2.5e-28 131.0 187 42.2
C04p21250 Brassica napus HOM05D007725 ORTHO05D009774 3.0e-21 107.5 105 59.0
BcaC02g11621 Brassica carinata HOM05D007725 ORTHO05D009774 6.2e-19 99.8 67 80.6
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 6.2e-19 99.8 176 36.4
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 5.2e-18 96.7 182 50.5
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 1.2e-17 95.5 343 46.4
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 4.6e-14 83.6 67 59.7
BcaB06g26090 Brassica carinata HOM05D007725 ORTHO05D009774 1.5e-09 68.6 37 91.9


User provided reference genes

Program Settings