Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 1.3e-144 516.5 282 100.0
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.9e-124 449.5 290 83.4
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 5.7e-113 411.4 281 77.9
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 7.4e-105 384.4 283 73.9
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.7e-96 356.7 283 73.9
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.1e-92 344.0 283 66.8
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 4.8e-88 328.6 309 61.8
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 2.1e-83 313.2 280 63.9
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 2.1e-83 313.2 280 63.9
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 5.2e-82 308.5 280 63.6
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 3.5e-78 295.8 280 62.5
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 5.9e-78 295.0 302 59.3
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 1.7e-77 293.5 303 58.4
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.1e-71 272.3 280 56.1
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.6e-70 268.9 299 53.2
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 7.8e-62 241.5 301 49.5
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 4.7e-59 232.3 306 46.7
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 8.1e-59 231.5 311 46.6
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 8.1e-59 231.5 311 46.6
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.4e-58 230.7 311 46.6
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.0e-57 226.9 297 47.1
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 4.4e-57 225.7 293 48.1
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.1e-55 221.1 314 42.4
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.4e-55 220.7 286 47.9
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 4.1e-55 219.2 313 46.3
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 5.4e-55 218.8 327 43.7
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 1.6e-54 217.2 305 45.9
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.6e-54 217.2 329 43.5
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 2.1e-54 216.9 308 44.5
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 4.6e-54 215.7 308 44.5
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 6.0e-54 215.3 259 49.8
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.7e-53 213.8 309 46.3
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 5.1e-53 212.2 309 42.7
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 6.6e-53 211.8 307 44.6
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.2e-51 207.6 307 43.0
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.2e-51 207.6 313 41.5
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 2.8e-51 206.5 309 44.0
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 2.8e-51 206.5 302 45.4
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.4e-50 204.1 274 46.0
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 4.0e-50 202.6 298 43.3
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 3.4e-49 199.5 290 41.4
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 4.4e-49 199.1 309 44.3
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 2.2e-48 196.8 309 41.1
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.2e-48 196.8 313 40.9
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 6.4e-48 195.3 312 41.3
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 6.4e-48 195.3 297 43.4
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 1.4e-47 194.1 298 41.3
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 2.4e-47 193.4 296 43.2
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 5.4e-47 192.2 296 41.9
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 5.4e-47 192.2 292 42.5
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 2.7e-46 189.9 308 39.9
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 3.5e-46 189.5 289 39.4
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 1.0e-45 188.0 299 41.1
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 1.3e-45 187.6 301 41.9
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 3.9e-45 186.0 313 42.2
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 5.1e-45 185.7 311 40.5
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.5e-44 184.1 296 41.2
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 1.5e-44 184.1 334 38.9
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.5e-44 184.1 293 41.0
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.9e-44 183.7 295 41.4
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 2.5e-44 183.3 289 42.6
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 4.3e-44 182.6 290 41.0
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 4.3e-44 182.6 288 41.7
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 5.6e-44 182.2 284 40.5
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 5.6e-44 182.2 293 40.6
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 9.6e-44 181.4 229 51.1
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 9.6e-44 181.4 310 42.3
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.2e-43 181.0 291 40.5
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 2.1e-43 180.3 302 41.1
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 2.1e-43 180.3 304 40.8
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 3.6e-43 179.5 299 40.1
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 3.6e-43 179.5 312 37.8
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.6e-43 179.5 312 37.8
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 3.6e-43 179.5 297 39.7
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 6.2e-43 178.7 297 40.4
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 8.1e-43 178.3 312 37.5
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 1.1e-42 177.9 296 40.2
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 2.4e-42 176.8 302 41.4
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 2.4e-42 176.8 297 40.1
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 4.0e-42 176.0 289 38.8
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.5e-41 174.1 245 49.4
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 2.6e-41 173.3 327 39.4
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.7e-40 170.6 331 37.2
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 4.9e-40 169.1 350 36.0
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 4.9e-40 169.1 300 39.0
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 8.4e-40 168.3 162 60.5
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 8.4e-40 168.3 311 37.9
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.2e-39 166.4 317 36.9
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 5.4e-39 165.6 254 42.9
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 9.3e-39 164.9 299 37.8
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 3.5e-38 162.9 289 36.7
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 7.8e-38 161.8 304 38.5
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.8e-38 161.8 312 36.5
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.3e-37 161.0 211 51.7
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 2.3e-37 160.2 118 71.2
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 5.1e-37 159.1 308 38.0
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 1.5e-36 157.5 315 35.6
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 2.5e-36 156.8 301 40.2
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.3e-36 156.4 276 39.9
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 9.6e-36 154.8 290 39.0
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 2.8e-35 153.3 375 33.3
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.1e-34 151.4 279 38.4
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.4e-34 150.2 295 38.0
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 2.4e-34 150.2 302 37.4
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 2.0e-33 147.1 309 35.9
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.3e-32 144.4 356 33.7
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 3.8e-32 142.9 286 37.1
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 3.8e-32 142.9 288 39.2
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.9e-31 140.6 326 35.9
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 9.3e-31 138.3 292 36.6
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 9.3e-31 138.3 282 34.4
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 1.2e-30 137.9 279 35.8
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 3.5e-30 136.3 341 36.1
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 5.1e-29 132.5 211 43.6
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 9.6e-28 128.3 227 40.5
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.6e-27 127.5 96 62.5
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 4.8e-27 125.9 324 33.6
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 5.8e-25 119.0 309 32.7
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 1.3e-24 117.9 117 55.6
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 2.2e-24 117.1 203 40.9
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 6.4e-24 115.5 117 55.6
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 2.4e-23 113.6 401 28.4
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 7.9e-22 108.6 211 35.5
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 1.3e-21 107.8 106 56.6
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.3e-21 107.1 151 51.0
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 2.3e-21 107.1 206 36.9
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 7.4e-20 102.1 245 35.5
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 9.6e-20 101.7 117 50.4
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 9.6e-20 101.7 99 51.5
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 1.5e-17 94.4 147 36.7
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 1.5e-17 94.4 275 27.6
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 2.6e-17 93.6 229 33.6
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 4.5e-17 92.8 100 53.0
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 2.9e-16 90.1 223 35.0
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 6.5e-16 89.0 152 35.5
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 6.5e-16 89.0 344 26.5
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 1.4e-15 87.8 251 29.1
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.1e-12 78.2 59 69.5
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 1.5e-12 77.8 306 26.5
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.9e-12 77.4 184 35.9
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 6.3e-11 72.4 95 47.4
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 2.4e-10 70.5 106 36.8
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.1e-10 70.1 55 58.2
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.1e-10 70.1 210 33.8
AL1G58150 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 7.6e-09 65.5 97 45.4
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 6.5e-08 62.4 101 34.7
C02p39380 Brassica napus HOM05D015278 ORTHO05D032781 1.1e-07 61.6 64 57.8
BolC2t09948H Brassica oleracea HOM05D015278 ORTHO05D032781 1.1e-07 61.6 64 57.8
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.9e-07 60.8 343 22.7
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 3.5e-06 56.6 182 29.7


User provided reference genes

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