Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 2214.1 1122 100.0
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 2123.6 1122 95.8
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 2112.4 1120 95.3
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 2052.3 1124 92.4
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1986.8 1122 89.0
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1978.8 1123 89.2
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1836.6 1116 84.1
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1833.9 1116 84.1
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1829.3 1115 83.6
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1825.8 1115 83.5
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1816.6 1119 82.3
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1626.7 1120 74.2
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 0.0e+00 1578.5 1118 75.1
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1277.7 1139 58.9
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1273.1 1139 59.4
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1260.7 1140 57.9
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1255.0 1138 58.9
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1254.6 1139 57.2
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1250.3 1142 58.1
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1248.8 1141 57.6
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1245.0 1155 57.9
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1236.9 1127 57.1
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1233.8 1138 57.3
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1218.0 1158 56.2
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1217.6 1143 57.4
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1205.7 1140 55.8
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1204.1 1136 55.5
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1199.1 1136 55.3
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1198.0 1153 55.8
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1197.6 1136 55.5
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1192.9 1149 55.6
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1189.5 1139 54.8
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1184.1 1140 55.5
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1182.5 1140 54.8
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1181.4 1140 54.9
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1177.9 1158 54.5
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1177.5 1148 54.1
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1174.5 1141 54.5
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1171.0 1140 54.6
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1167.5 1140 54.4
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1167.1 1142 54.4
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1164.8 1140 54.3
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1164.4 1137 54.3
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1161.0 1147 55.0
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1154.4 1151 53.6
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1149.0 1128 55.1
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1148.7 1146 54.7
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1147.9 1129 55.0
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1146.0 1153 52.2
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1140.2 1135 54.0
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1139.8 1132 54.7
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1139.0 1146 54.4
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1138.6 1154 53.2
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1134.4 1142 54.2
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1132.9 1137 53.1
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1129.4 1154 51.5
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1123.6 1179 52.2
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1122.5 1150 52.3
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1118.6 1137 53.3
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1117.1 1142 52.4
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1116.3 1137 51.8
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1109.0 1139 51.4
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1107.0 1139 51.3
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1106.3 1137 51.1
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1103.6 1136 52.4
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1094.0 1135 52.4
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1093.2 1146 51.5
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1087.0 1127 51.0
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1086.2 1133 51.9
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1085.9 1137 50.7
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 7.7e-312 1074.7 1161 50.0
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 7.7e-312 1074.3 1147 50.5
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 2.9e-309 1065.4 1140 51.4
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 2.9e-309 1065.4 1144 50.7
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 4.9e-309 1064.7 1097 52.9
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 2.1e-307 1059.3 1086 52.6
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 9.6e-305 1050.4 1155 49.0
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 8.1e-304 1047.3 1150 49.2
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 3.4e-302 1042.0 1026 53.3
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 3.8e-301 1038.5 1138 51.2
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 1.4e-295 1020.0 1152 48.4
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 3.1e-295 1018.8 1144 49.6
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 8.7e-290 1000.7 1026 51.7
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 1.4e-287 993.4 1160 47.8
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 1.7e-285 986.5 1137 48.5
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 2.5e-284 982.6 1156 47.3
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 5.9e-278 961.4 1184 46.5
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 5.9e-278 961.4 1154 47.3
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 9.1e-271 937.6 1116 47.0
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 4.7e-267 925.2 1142 45.6
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 7.7e-238 828.2 908 50.6
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 1.5e-233 813.9 1139 43.7
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 4.7e-227 792.3 769 53.6
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 4.4e-217 759.2 650 59.7
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 1.4e-215 754.2 1139 39.3
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 5.6e-212 742.3 661 57.6
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 1.8e-202 710.7 1215 37.9
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.4e-202 710.3 1162 39.2
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 8.1e-195 685.3 653 55.7
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 6.9e-194 682.2 1232 36.2
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 1.0e-189 668.3 652 54.0
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 3.5e-182 643.3 654 52.3
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 1.3e-179 634.8 606 56.8
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.6e-171 607.8 573 56.0
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 6.7e-165 585.9 577 56.2
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 1.7e-160 571.2 651 48.7
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.2e-153 548.5 719 45.5
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 2.0e-137 494.6 515 51.7
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 7.7e-137 492.7 462 56.5
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.6e-134 483.8 478 55.9
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 1.8e-130 471.5 472 54.2
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 1.4e-82 312.4 1579 24.1
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 6.9e-77 293.5 512 36.5
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 5.3e-69 267.3 723 33.7
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 6.0e-65 253.8 549 32.8
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 5.8e-60 237.3 260 49.6
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 2.9e-59 235.0 585 31.6
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-58 232.3 382 41.6
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 4.8e-54 217.6 475 30.7
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 7.4e-47 193.7 574 28.6
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-42 179.1 501 28.1
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 3.6e-41 174.9 206 44.2
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 5.3e-37 161.0 376 33.5
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 1.7e-35 156.0 243 38.7
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 4.2e-34 151.4 245 35.5
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-33 149.8 667 25.5
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-33 149.8 667 25.5
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 5.7e-31 141.0 198 42.4
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-30 139.8 175 42.9
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 4.8e-30 137.9 148 48.0
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 7.0e-29 134.0 214 41.1
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 6.5e-27 127.5 120 55.0
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 4.7e-25 121.3 124 48.4
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 6.1e-17 94.4 241 30.7
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 6.1e-17 94.4 241 30.7
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 4.0e-16 91.7 162 35.8
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 8.8e-16 90.5 79 57.0
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 1.7e-14 86.3 53 69.8
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 4.5e-12 78.2 53 67.9
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 1.7e-11 76.3 58 55.2
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 5.2e-08 64.7 153 34.6
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 2.0e-07 62.8 68 45.6
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.6e-07 62.4 96 35.4
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 7.5e-07 60.8 80 38.8


User provided reference genes

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