Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1968 Capsella rubella HOM05D007631 ORTHO05D009566 1.8e-128 462.6 233 100.0
AL3G33250 Arabidopsis lyrata HOM05D007631 ORTHO05D009566 5.4e-109 397.9 233 88.8
AT3G19800 Arabidopsis thaliana HOM05D007631 ORTHO05D009566 5.0e-107 391.3 234 87.2
Thhalv10021444m.g Eutrema salsugineum HOM05D007631 ORTHO05D009566 8.0e-105 384.0 231 84.8
Sp3g17810 Schrenkiella parvula HOM05D007631 ORTHO05D009566 6.8e-104 380.9 232 83.2
CARHR095310 Cardamine hirsuta HOM05D007631 ORTHO05D009566 2.9e-102 375.6 233 82.4
A01p34940 Brassica napus HOM05D007631 ORTHO05D009566 8.0e-97 357.5 233 79.0
BraA01t03577Z Brassica rapa HOM05D007631 ORTHO05D009566 8.0e-97 357.5 233 79.0
C01p44350 Brassica napus HOM05D007631 ORTHO05D009566 1.2e-95 353.6 233 78.1
BolC1t04400H Brassica oleracea HOM05D007631 ORTHO05D009566 1.2e-95 353.6 233 78.1
Aa31LG8G6570 Aethionema arabicum HOM05D007631 ORTHO05D009566 3.9e-91 338.6 232 76.3
Manes.04G066700 Manihot esculenta HOM05D007631 ORTHO05D009566 2.8e-65 252.7 229 59.0
Gohir.D02G134900 Gossypium hirsutum HOM05D007631 ORTHO05D009566 1.1e-61 240.7 198 61.1
Gohir.A03G110300 Gossypium hirsutum HOM05D007631 ORTHO05D009566 7.1e-61 238.0 198 60.1
TWI53G1419 Tripterygium wilfordii HOM05D007631 ORTHO05D009566 1.2e-60 237.3 215 59.1
Duzib268G1119 Durio zibethinus HOM05D007631 ORTHO05D009566 2.1e-60 236.5 221 55.7
AUR62015208 Chenopodium quinoa HOM05D007631 ORTHO05D009566 6.0e-60 235.0 179 60.3
Ciclev10032529m.g Citrus clementina HOM05D007631 ORTHO05D009566 6.0e-60 235.0 186 61.8
Eucgr.J00853 Eucalyptus grandis HOM05D007631 ORTHO05D009566 1.3e-59 233.8 181 61.9
CiPaw.09G164100 Carya illinoinensis HOM05D007631 ORTHO05D009566 2.3e-59 233.0 192 60.9
Potri.005G094700 Populus trichocarpa HOM05D007631 ORTHO05D009566 3.0e-59 232.6 181 61.9
EL10Ac9g22926 Beta vulgaris HOM05D007631 ORTHO05D009566 5.1e-59 231.9 180 59.4
Nn4g24939 Nelumbo nucifera HOM05D007631 ORTHO05D009566 2.5e-58 229.6 179 61.5
ECA246G0740 Erigeron canadensis HOM05D007631 ORTHO05D009566 4.8e-57 225.3 179 61.5
PGR119G1778 Punica granatum HOM05D007631 ORTHO05D009566 8.1e-57 224.6 254 50.8
CsaV3_3G031500 Cucumis sativus L. HOM05D007631 ORTHO05D009566 6.9e-56 221.5 180 58.9
CsaV3_3G032520 Cucumis sativus L. HOM05D007631 ORTHO05D009566 9.0e-56 221.1 195 56.4
Lsat_1_v5_gn_3_33601 Lactuca sativa HOM05D007631 ORTHO05D009566 1.2e-55 220.7 179 61.5
Cc11_g05090 Coffea canephora HOM05D007631 ORTHO05D009566 1.5e-55 220.3 182 58.2
MELO3C024033.2 Cucumis melo HOM05D007631 ORTHO05D009566 3.4e-55 219.2 180 58.9
PSO478G5292 Papaver somniferum HOM05D007631 ORTHO05D009566 9.9e-55 217.6 184 57.1
Hma1.2p1_0499F.1_g166830 Hydrangea macrophylla HOM05D007631 ORTHO05D009566 1.3e-54 217.2 225 52.9
Glyma.11G102300 Glycine max HOM05D007631 ORTHO05D009566 2.9e-54 216.1 187 57.8
ClCG10G011860 Citrullus lanatus HOM05D007631 ORTHO05D009566 1.1e-53 214.2 180 57.2
SalBow6G3201 Salvia bowleyana HOM05D007631 ORTHO05D009566 1.1e-53 214.2 181 58.6
CAN.G157.15 Capsicum annuum HOM05D007631 ORTHO05D009566 1.9e-53 213.4 233 50.2
Lalb_Chr03g0024841 Lupinus albus HOM05D007631 ORTHO05D009566 4.2e-53 212.2 184 58.7
Lj3g0001232 Lotus japonicus HOM05D007631 ORTHO05D009566 1.6e-52 210.3 201 55.2
CANSAT64G0359 Cannabis sativa HOM05D007631 ORTHO05D009566 2.1e-52 209.9 185 57.3
Medtr4g074590 Medicago truncatula HOM05D007631 ORTHO05D009566 3.5e-52 209.1 222 50.9
PGSC0003DMG400029978 Solanum tuberosum HOM05D007631 ORTHO05D009566 7.9e-52 208.0 207 54.1
Solyc02g055440.4 Solanum lycopersicum HOM05D007631 ORTHO05D009566 1.8e-51 206.8 208 50.5
TPR.G32328 Trifolium pratense HOM05D007631 ORTHO05D009566 3.0e-51 206.1 191 57.6
Sopen02g009160 Solanum pennellii HOM05D007631 ORTHO05D009566 8.7e-51 204.5 208 50.0
FAN12G2650 Fragaria x ananassa HOM05D007631 ORTHO05D009566 2.5e-50 203.0 239 49.8
VMungo1127G1566 Vigna mungo HOM05D007631 ORTHO05D009566 4.3e-50 202.2 200 53.0
PSO017G5087 Papaver somniferum HOM05D007631 ORTHO05D009566 2.1e-49 199.9 164 57.3
MD16G1250700 Malus domestica HOM05D007631 ORTHO05D009566 2.8e-49 199.5 179 56.4
HanXRQChr17g0540801 Helianthus annuus HOM05D007631 ORTHO05D009566 1.4e-48 197.2 153 62.7
FAN07G2143 Fragaria x ananassa HOM05D007631 ORTHO05D009566 2.6e-47 193.0 198 53.0
Nitab4.5_0002392g0040 Nicotiana tabacum HOM05D007631 ORTHO05D009566 1.3e-46 190.7 180 53.3
Ca_03026_v3 Cicer arietinum L. HOM05D007631 ORTHO05D009566 1.7e-46 190.3 203 52.7
GSVIVG01010153001 Vitis vinifera HOM05D007631 ORTHO05D009566 2.9e-46 189.5 227 49.3
Dinv17601 Davidia involucrata HOM05D007631 ORTHO05D009566 1.4e-45 187.2 204 50.5
unitig_699.g19551 Utricularia gibba HOM05D007631 ORTHO05D009566 1.2e-44 184.1 199 48.2
COL.COLO4_27670 Corchorus olitorius HOM05D007631 ORTHO05D009566 1.6e-44 183.7 201 50.7
Hund24286 Selenicereus undatus HOM05D007631 ORTHO05D009566 8.7e-43 177.9 140 58.6
arahy.Tifrunner.gnm1.ann1.C4PR70 Arachis hypogaea HOM05D007631 ORTHO05D009566 1.1e-42 177.6 266 43.2
vmacro10901 Vaccinium macrocarpon HOM05D007631 ORTHO05D009566 1.1e-42 177.6 227 41.9
HPP92_025628 Vanilla planifolia HOM05D007631 ORTHO05D009566 8.2e-41 171.4 232 44.0
Sc10g0006760 Simmondsia chinensis HOM05D007631 ORTHO05D009566 1.8e-40 170.2 141 56.7
Sed0008358 Sechium edule HOM05D007631 ORTHO05D009566 6.9e-40 168.3 195 46.7
FAN17G2236 Fragaria x ananassa HOM05D007631 ORTHO05D009566 2.6e-39 166.4 150 57.3
Phvul.011G031300 Phaseolus vulgaris HOM05D007631 ORTHO05D009566 7.6e-39 164.9 189 47.6
Os04g0525000 Oryza sativa ssp. japonica HOM05D007631 ORTHO05D009566 1.4e-37 160.6 160 50.0
Psat7g173560 Pisum sativum HOM05D007631 ORTHO05D009566 5.5e-37 158.7 161 54.7
Oeu033537.1 Olea europaea HOM05D007631 ORTHO05D009566 1.0e-35 154.5 136 58.1
SGA_v2.0_scaffold88G27232 Striga asiatica HOM05D007631 ORTHO05D009566 1.0e-35 154.5 127 59.1
Zm00001eb076870 Zea mays HOM05D007631 ORTHO05D009566 3.0e-35 152.9 159 47.2
DCAR_030399 Daucus carota HOM05D007631 ORTHO05D009566 5.1e-35 152.1 204 43.1
Haze_20362 Corylus avellana HOM05D007631 ORTHO05D009566 9.7e-34 147.9 233 42.5
ATR0618G124 Amborella trichopoda HOM05D007631 ORTHO05D009566 9.1e-32 141.4 131 55.0
Gorai.005G150800 Gossypium raimondii HOM05D007631 ORTHO05D009566 2.0e-31 140.2 136 53.7
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 3.4e-31 139.4 116 58.6
QL03p043760 Quercus lobata HOM05D007631 ORTHO05D009566 7.7e-31 138.3 111 57.7
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 1.3e-30 137.5 161 44.7
FvH4_4g07430 Fragaria vesca HOM05D007631 ORTHO05D009566 1.3e-30 137.5 167 47.3
Prupe.1G077300 Prunus persica HOM05D007631 ORTHO05D009566 1.3e-30 137.5 169 45.0
Thecc.02G311600 Theobroma cacao HOM05D007631 ORTHO05D009566 3.8e-30 136.0 159 49.7
RcHm_v2.0_Chr4g0399891 Rosa chinensis HOM05D007631 ORTHO05D009566 1.1e-29 134.4 115 57.4
Peaxi162Scf00363g00724 Petunia axillaris HOM05D007631 ORTHO05D009566 2.5e-29 133.3 95 66.3
Atru.chr11.1322 Acer truncatum HOM05D007631 ORTHO05D009566 3.9e-27 125.9 112 61.6
MBI06_g36505_MAGBIO Magnolia biondii HOM05D007631 ORTHO05D009566 9.7e-26 121.3 141 46.1
Aqoxy7G02010 Aquilegia oxysepala HOM05D007631 ORTHO05D009566 2.0e-23 113.6 117 47.0
Pp3c1_30620 Physcomitrium patens HOM05D007631 ORTHO05D009566 1.6e-20 104.0 188 34.0
TAR622G1133 Trochodendron aralioides HOM05D007631 ORTHO05D009566 3.6e-20 102.8 85 56.5
AagrBONN_evm.TU.Sc2ySwM_228.2165 Anthoceros agrestis HOM05D007631 ORTHO05D009566 8.0e-20 101.7 184 34.2
Atru.BG.289.p Acer truncatum HOM05D007631 ORTHO05D009566 1.8e-19 100.5 93 58.1
Cfa019889 Carpinus fangiana HOM05D007631 ORTHO05D009566 1.7e-17 94.0 75 57.3
FAN22G0357 Fragaria x ananassa HOM05D007631 ORTHO05D009566 1.7e-17 94.0 92 50.0
Migut.E00703 Erythranthe guttata HOM05D007631 ORTHO05D009566 7.0e-16 88.6 101 47.5
Migut.E00614 Erythranthe guttata HOM05D007631 ORTHO05D009566 1.6e-15 87.4 84 52.4
CSS0013150 Camellia sinensis var. sinensis HOM05D007631 ORTHO05D009566 6.1e-12 75.5 57 64.9
Nitab4.5_0000139g0130 Nicotiana tabacum HOM05D007631 ORTHO05D009566 6.1e-12 75.5 180 27.8
arahy.Tifrunner.gnm1.ann1.GZ47R7 Arachis hypogaea HOM05D007631 ORTHO05D009566 6.5e-06 55.5 114 34.2


User provided reference genes

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