Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 1.1e-40 169.5 84 100.0
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 2.3e-38 161.8 82 96.3
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 6.8e-38 160.2 82 96.3
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 2.6e-37 158.3 83 92.8
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 3.4e-37 157.9 82 93.9
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 4.4e-37 157.5 82 93.9
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 5.7e-37 157.1 83 92.8
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 5.7e-37 157.1 83 92.8
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 7.5e-37 156.8 82 93.9
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 9.8e-37 156.4 82 92.7
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 9.8e-37 156.4 82 92.7
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 1.3e-36 156.0 82 92.7
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 1.3e-36 156.0 82 92.7
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 1.3e-36 156.0 82 92.7
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 1.3e-36 156.0 82 92.7
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 1.3e-36 156.0 82 92.7
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 6.4e-36 153.7 82 90.2
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 8.3e-36 153.3 82 91.5
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 2.9e-28 128.3 83 77.1
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 3.7e-28 127.9 83 72.3
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 4.9e-28 127.5 80 77.5
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 4.9e-28 127.5 80 77.5
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 6.4e-28 127.1 83 75.9
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 8.3e-28 126.7 80 75.0
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 1.9e-27 125.6 83 73.5
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 1.9e-27 125.6 81 76.5
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 1.9e-27 125.6 80 76.2
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 1.9e-27 125.6 81 74.1
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 1.9e-27 125.6 80 76.2
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 2.4e-27 125.2 81 72.8
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 2.4e-27 125.2 82 73.2
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 2.4e-27 125.2 81 74.1
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 3.2e-27 124.8 81 72.8
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 3.2e-27 124.8 81 74.1
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 3.2e-27 124.8 80 76.2
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 1.2e-26 122.9 80 73.8
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 2.0e-26 122.1 96 72.9
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 2.0e-26 122.1 80 72.5
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 2.7e-26 121.7 83 67.5
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 2.7e-26 121.7 83 67.5
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 2.7e-26 121.7 80 72.5
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 2.7e-26 121.7 83 71.1
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 4.6e-26 120.9 80 71.2
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 4.6e-26 120.9 80 72.5
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 4.6e-26 120.9 80 71.2
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 4.6e-26 120.9 81 67.9
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 6.0e-26 120.6 80 72.5
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 6.0e-26 120.6 80 71.2
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 7.8e-26 120.2 80 71.2
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 1.3e-25 119.4 80 70.0
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 1.3e-25 119.4 80 71.2
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 1.7e-25 119.0 80 71.2
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.3e-25 118.6 81 70.4
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 2.3e-25 118.6 80 71.2
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 3.0e-25 118.2 80 71.2
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 3.9e-25 117.9 83 69.9
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 3.9e-25 117.9 83 68.7
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 3.9e-25 117.9 83 68.7
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 3.9e-25 117.9 81 67.9
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 3.9e-25 117.9 80 68.8
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 5.0e-25 117.5 81 69.1
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 1.1e-24 116.3 80 67.5
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 1.5e-24 115.9 80 70.0
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 1.5e-24 115.9 83 66.3
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 1.5e-24 115.9 81 69.1
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 66.2
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 71.2
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 2.5e-24 115.2 81 69.1
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 2.5e-24 115.2 84 64.3
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 3.3e-24 114.8 80 68.8
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 3.3e-24 114.8 82 68.3
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 4.3e-24 114.4 92 70.7
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 4.3e-24 114.4 81 67.9
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 5.6e-24 114.0 111 62.2
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 7.3e-24 113.6 80 70.0
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 9.5e-24 113.2 81 64.2
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 1.2e-23 112.8 81 66.7
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 1.2e-23 112.8 80 70.0
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 1.6e-23 112.5 80 70.0
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 1.6e-23 112.5 80 66.2
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 2.1e-23 112.1 80 68.8
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 2.8e-23 111.7 80 68.8
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 3.6e-23 111.3 80 66.2
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 3.6e-23 111.3 80 66.2
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 3.6e-23 111.3 80 68.8
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 3.6e-23 111.3 81 66.7
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 8.1e-23 110.2 81 63.0
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 8.1e-23 110.2 82 65.9
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 8.1e-23 110.2 79 69.6
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 1.1e-22 109.8 80 65.0
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 1.1e-22 109.8 80 65.0
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 1.4e-22 109.4 83 65.1
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.4e-22 109.4 81 65.4
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 3.1e-22 108.2 79 69.6
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 6.8e-22 107.1 80 62.5
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 1.5e-21 105.9 79 65.8
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 2.0e-21 105.5 80 65.0
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 2.0e-21 105.5 80 63.8
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 1.7e-20 102.4 82 59.8
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 4.9e-20 100.9 80 63.8
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 1.2e-18 96.3 67 67.2
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 6.0e-18 94.0 66 66.7
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 7.8e-18 93.6 76 63.2
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 2.5e-16 88.6 54 85.2
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 3.3e-16 88.2 69 60.9
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 2.1e-15 85.5 60 68.3
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 4.7e-15 84.3 75 57.3
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 1.4e-14 82.8 81 50.6
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 1.4e-14 82.8 57 71.9
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 3.1e-14 81.6 81 50.6
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 1.7e-09 65.9 76 43.4
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 3.9e-09 64.7 61 54.1
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 2.5e-08 62.0 40 75.0
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 2.1e-07 58.9 59 47.5
Hma1.2p1_2341F.1_g320300 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 4.0e-06 54.7 79 43.0


User provided reference genes

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