Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1903 Capsella rubella HOM05D002458 ORTHO05D002603 5.0e-76 287.7 149 100.0
AT3G19200 Arabidopsis thaliana HOM05D002458 ORTHO05D002603 3.7e-55 218.4 151 84.1
CARHR094610 Cardamine hirsuta HOM05D002458 ORTHO05D002603 3.7e-55 218.4 151 81.5
Thhalv10022052m.g Eutrema salsugineum HOM05D002458 ORTHO05D002603 1.0e-52 210.3 156 78.2
A05p30440 Brassica napus HOM05D002458 ORTHO05D002603 1.7e-52 209.5 154 77.3
BcaB06g25976 Brassica carinata HOM05D002458 ORTHO05D002603 2.3e-52 209.1 156 76.3
BraA05t21883Z Brassica rapa HOM05D002458 ORTHO05D002603 2.3e-52 209.1 154 77.3
BolC5t33331H Brassica oleracea HOM05D002458 ORTHO05D002603 2.5e-51 205.7 155 75.5
C05p46040 Brassica napus HOM05D002458 ORTHO05D002603 7.3e-51 204.1 155 75.5
Sp3g17270 Schrenkiella parvula HOM05D002458 ORTHO05D002603 7.3e-51 204.1 160 75.6
AL3G32580 Arabidopsis lyrata HOM05D002458 ORTHO05D002603 1.1e-49 200.3 151 78.1
AT4G34419 Arabidopsis thaliana HOM05D002458 ORTHO05D002603 1.5e-16 90.1 131 47.3
Carub.0007s0589 Capsella rubella HOM05D002458 ORTHO05D002603 2.6e-16 89.4 129 48.1
CARHR242340 Cardamine hirsuta HOM05D002458 ORTHO05D002603 5.8e-16 88.2 128 46.9
AL7G16820 Arabidopsis lyrata HOM05D002458 ORTHO05D002603 7.6e-16 87.8 125 46.4
A01p04010 Brassica napus HOM05D001453 ORTHO05D002020 9.9e-16 87.4 125 49.6
BraA01t00390Z Brassica rapa HOM05D001453 ORTHO05D001444 9.9e-16 87.4 125 49.6
Haze_01829 Corylus avellana HOM05D002458 ORTHO05D002603 1.7e-15 86.7 128 46.9
Sp7g32210 Schrenkiella parvula HOM05D002458 ORTHO05D002603 2.9e-15 85.9 128 46.9
BolC1t00421H Brassica oleracea HOM05D001453 ORTHO05D002020 6.4e-15 84.7 125 48.8
Cfa005475 Carpinus fangiana HOM05D002458 ORTHO05D002603 1.1e-14 84.0 128 45.3
C01p04330 Brassica napus HOM05D001453 ORTHO05D002020 2.4e-14 82.8 125 48.0
BolC3t20870H Brassica oleracea HOM05D002458 ORTHO05D002603 1.6e-13 80.1 123 48.0
A08p16860 Brassica napus HOM05D002458 ORTHO05D002603 2.1e-13 79.7 123 47.2
BraA08t33650Z Brassica rapa HOM05D002458 ORTHO05D002603 2.1e-13 79.7 123 47.2
THA.LOC104819584 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 3.5e-13 79.0 127 44.1
BcaC01g00905 Brassica carinata HOM05D002458 ORTHO05D002603 4.6e-13 78.6 123 47.2
C03p85790 Brassica napus HOM05D002458 ORTHO05D002603 4.6e-13 78.6 123 47.2
QL11p036042 Quercus lobata HOM05D002458 ORTHO05D002603 6.0e-13 78.2 108 47.2
MD10G1093900 Malus domestica HOM05D002458 ORTHO05D002603 7.9e-13 77.8 124 43.5
Thhalv10027139m.g Eutrema salsugineum HOM05D002458 ORTHO05D002603 1.0e-12 77.4 125 44.8
HanXRQChr16g0515091 Helianthus annuus HOM05D002458 ORTHO05D002603 2.3e-12 76.3 118 44.9
MD05G1079600 Malus domestica HOM05D002458 ORTHO05D002603 3.0e-12 75.9 114 45.6
Prupe.8G123500 Prunus persica HOM05D002458 ORTHO05D002603 5.1e-12 75.1 113 44.2
Sabra04G0093500 Salix brachista HOM05D002458 ORTHO05D002603 8.7e-12 74.3 120 42.5
Potri.004G141600 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.1e-11 73.9 111 44.1
CiPaw.05G051800 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.5e-11 73.6 131 43.5
FvH4_2g06210 Fragaria vesca HOM05D002458 ORTHO05D002603 1.5e-11 73.6 111 50.5
FAN24G3116 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.5e-11 73.6 111 50.5
Ciclev10029915m.g Citrus clementina HOM05D002458 ORTHO05D002603 1.9e-11 73.2 112 41.1
Sed0018653 Sechium edule HOM05D002458 ORTHO05D002603 2.5e-11 72.8 112 47.3
Ca_18677_v3 Cicer arietinum L. HOM05D002458 ORTHO05D002603 3.3e-11 72.4 118 42.4
Solyc01g108170.3 Solanum lycopersicum HOM05D002458 ORTHO05D002603 4.3e-11 72.0 84 52.4
PGSC0003DMG400025891 Solanum tuberosum HOM05D002458 ORTHO05D002603 4.3e-11 72.0 84 53.6
Atru.chr5.2728 Acer truncatum HOM05D002458 ORTHO05D002603 5.6e-11 71.6 119 44.5
Psat7g124200 Pisum sativum HOM05D002458 ORTHO05D002603 5.6e-11 71.6 117 41.9
FAN15G1604 Fragaria x ananassa HOM05D002458 ORTHO05D002603 7.4e-11 71.2 111 46.8
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 7.4e-11 71.2 120 46.7
FAN20G0269 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.6e-11 70.9 111 46.8
FAN27G1641 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.6e-11 70.9 111 46.8
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 9.6e-11 70.9 120 45.0
CiPaw.06G143400 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.3e-10 70.5 129 44.2
RcHm_v2.0_Chr6g0256981 Rosa chinensis HOM05D002458 ORTHO05D002603 1.3e-10 70.5 135 42.2
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 1.6e-10 70.1 124 43.5
Sopen01g050400 Solanum pennellii HOM05D002458 ORTHO05D002603 1.6e-10 70.1 84 51.2
CAN.G165.22 Capsicum annuum HOM05D002458 ORTHO05D002603 2.1e-10 69.7 119 45.4
Lalb_Chr16g0384661 Lupinus albus HOM05D002458 ORTHO05D002603 2.8e-10 69.3 120 43.3
Nitab4.5_0007480g0020 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.8e-10 68.6 123 43.1
Thecc.02G099600 Theobroma cacao HOM05D002458 ORTHO05D002603 4.8e-10 68.6 149 39.6
TPR.G30834 Trifolium pratense HOM05D002458 ORTHO05D002603 4.8e-10 68.6 117 42.7
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 6.2e-10 68.2 132 43.2
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 6.2e-10 68.2 125 42.4
TWI79G1260 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 6.2e-10 68.2 114 43.9
Cc02_g18710 Coffea canephora HOM05D002458 ORTHO05D002603 8.1e-10 67.8 112 44.6
Lsat_1_v5_gn_7_87020 Lactuca sativa HOM05D002458 ORTHO05D002603 1.1e-09 67.4 119 39.5
Medtr4g086340 Medicago truncatula HOM05D002458 ORTHO05D002603 1.1e-09 67.4 107 45.8
Peaxi162Scf00016g01824 Petunia axillaris HOM05D002458 ORTHO05D002603 1.1e-09 67.4 84 51.2
Potri.009G102800 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.8e-09 66.6 121 44.6
Nitab4.5_0002543g0060 Nicotiana tabacum HOM05D002458 ORTHO05D002603 2.4e-09 66.2 123 42.3
MSTRG.20151 Avicennia marina HOM05D002458 ORTHO05D002603 3.1e-09 65.9 125 41.6
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 4.0e-09 65.5 119 41.2
COL.COLO4_32666 Corchorus olitorius HOM05D002458 ORTHO05D002603 4.0e-09 65.5 113 41.6
Dinv23616 Davidia involucrata HOM05D002458 ORTHO05D002603 4.0e-09 65.5 124 40.3
Sabra09G0078700 Salix brachista HOM05D002458 ORTHO05D002603 4.0e-09 65.5 135 36.3
Sopen02g035350 Solanum pennellii HOM05D002458 ORTHO05D002603 4.0e-09 65.5 108 45.4
Cc07_g05940 Coffea canephora HOM05D002458 ORTHO05D002603 5.3e-09 65.1 125 40.8
Migut.B00340 Erythranthe guttata HOM05D002458 ORTHO05D002603 5.3e-09 65.1 121 40.5
HanXRQChr07g0191581 Helianthus annuus HOM05D002458 ORTHO05D002603 5.3e-09 65.1 115 47.0
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 6.9e-09 64.7 110 42.7
CsaV3_3G018550 Cucumis sativus L. HOM05D002458 ORTHO05D002603 6.9e-09 64.7 113 42.5
Duzib248G1687 Durio zibethinus HOM05D002458 ORTHO05D002603 6.9e-09 64.7 131 40.5
Oeu013702.1 Olea europaea HOM05D002458 ORTHO05D002603 6.9e-09 64.7 123 43.1
MELO3C019512.2 Cucumis melo HOM05D002458 ORTHO05D002603 9.0e-09 64.3 105 41.9
Gohir.D02G210400 Gossypium hirsutum HOM05D002458 ORTHO05D002603 9.0e-09 64.3 116 43.1
Gorai.005G238400 Gossypium raimondii HOM05D002458 ORTHO05D002603 9.0e-09 64.3 116 43.1
HanXRQChr10g0288991 Helianthus annuus HOM05D002458 ORTHO05D002603 9.0e-09 64.3 124 41.9
PGR142G0732 Punica granatum HOM05D002458 ORTHO05D002603 9.0e-09 64.3 102 42.2
Solyc02g090720.3 Solanum lycopersicum HOM05D002458 ORTHO05D002603 9.0e-09 64.3 108 43.5
Peaxi162Scf00450g00733 Petunia axillaris HOM05D002458 ORTHO05D002603 1.2e-08 63.9 134 37.3
Gorai.008G074900 Gossypium raimondii HOM05D002458 ORTHO05D002603 1.5e-08 63.5 134 38.1
Nitab4.5_0003503g0060 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.5e-08 63.5 84 50.0
Nitab4.5_0023509g0010 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.5e-08 63.5 84 50.0
Gohir.D12G068500 Gossypium hirsutum HOM05D002458 ORTHO05D002603 2.0e-08 63.2 117 39.3
Peaxi162Scf00003g02325 Petunia axillaris HOM05D002458 ORTHO05D002603 2.0e-08 63.2 126 42.1
Gohir.A03G189800 Gossypium hirsutum HOM05D002458 ORTHO05D002603 2.6e-08 62.8 114 42.1
unitig_899.g14964 Utricularia gibba HOM05D002458 ORTHO05D002603 2.6e-08 62.8 111 43.2
Duzib052G0113 Durio zibethinus HOM05D002458 ORTHO05D002603 3.4e-08 62.4 118 39.8
Oeu004830.1 Olea europaea HOM05D002458 ORTHO05D002603 3.4e-08 62.4 123 39.8
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 4.5e-08 62.0 132 39.4
SalBow1G7029 Salvia bowleyana HOM05D002458 ORTHO05D002603 4.5e-08 62.0 115 41.7
Sc18g0004030 Simmondsia chinensis HOM05D002458 ORTHO05D002603 4.5e-08 62.0 79 48.1
Actinidia00445 Actinidia chinensis HOM05D002458 ORTHO05D002603 5.8e-08 61.6 102 38.2
Migut.N01190 Erythranthe guttata HOM05D002458 ORTHO05D002603 7.6e-08 61.2 133 35.3
Phvul.003G293000 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 7.6e-08 61.2 122 42.6
FAN26G2469 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.9e-08 60.8 112 41.1
Psat2g166160 Pisum sativum HOM05D002458 ORTHO05D002603 9.9e-08 60.8 107 43.0
Dinv42151 Davidia involucrata HOM05D002458 ORTHO05D002603 1.3e-07 60.5 108 41.7
Gohir.A12G070600 Gossypium hirsutum HOM05D002458 ORTHO05D002603 1.3e-07 60.5 117 37.6
Lj4g0009220 Lotus japonicus HOM05D002458 ORTHO05D002603 1.3e-07 60.5 105 42.9
FAN19G0517 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.7e-07 60.1 112 41.1
FAN23G1767 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.7e-07 60.1 112 41.1
FAN28G2673 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.7e-07 60.1 112 41.1
Manes.10G065400 Manihot esculenta HOM05D002458 ORTHO05D002603 1.7e-07 60.1 125 39.2
SalBow3G3738 Salvia bowleyana HOM05D002458 ORTHO05D002603 1.7e-07 60.1 110 40.9
FAN04G0719 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.2e-07 59.7 112 40.2
FAN11G1855 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.2e-07 59.7 112 40.2
FAN12G1655 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.2e-07 59.7 112 40.2
FAN16G2042 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.2e-07 59.7 112 40.2
Psat4g087040 Pisum sativum HOM05D002458 ORTHO05D002603 2.2e-07 59.7 119 37.8
RcHm_v2.0_Chr2g0105301 Rosa chinensis HOM05D002458 ORTHO05D002603 2.2e-07 59.7 112 41.1
unitig_61.g26001 Utricularia gibba HOM05D002458 ORTHO05D002603 2.2e-07 59.7 128 40.6
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 2.9e-07 59.3 84 45.2
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 3.8e-07 58.9 121 39.7
Phvul.003G244300 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 4.9e-07 58.5 117 44.4
CANSAT01G1685 Cannabis sativa HOM05D002458 ORTHO05D002603 6.4e-07 58.2 114 43.9
Eucgr.H01652 Eucalyptus grandis HOM05D002458 ORTHO05D002603 6.4e-07 58.2 113 46.0
Glyma.02G133300 Glycine max HOM05D002458 ORTHO05D002603 6.4e-07 58.2 120 40.0
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 8.4e-07 57.8 111 41.4
COL.COLO4_11399 Corchorus olitorius HOM05D002458 ORTHO05D002603 8.4e-07 57.8 125 37.6
Glyma.07G211700 Glycine max HOM05D002458 ORTHO05D002603 8.4e-07 57.8 119 39.5
Hma1.2p1_0370F.1_g137860 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 8.4e-07 57.8 112 41.1
PGR042G0791 Punica granatum HOM05D002458 ORTHO05D002603 8.4e-07 57.8 111 39.6
arahy.Tifrunner.gnm1.ann1.U0D0WT Arachis hypogaea HOM05D002458 ORTHO05D002603 1.1e-06 57.4 78 46.2
CANSAT25G1360 Cannabis sativa HOM05D002458 ORTHO05D002603 1.1e-06 57.4 70 48.6
Ciclev10026611m.g Citrus clementina HOM05D002458 ORTHO05D002603 1.1e-06 57.4 110 42.7
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.1e-06 57.4 125 41.6
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 1.1e-06 57.4 84 44.0
TWI09G0929 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 1.1e-06 57.4 86 46.5
Dinv29979 Davidia involucrata HOM05D002458 ORTHO05D002603 1.4e-06 57.0 124 39.5
ECA234G2959 Erigeron canadensis HOM05D002458 ORTHO05D002603 1.4e-06 57.0 85 44.7
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.4e-06 57.0 109 40.4
Sabra07G0037800 Salix brachista HOM05D002458 ORTHO05D002603 1.4e-06 57.0 109 40.4
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 1.4e-06 57.0 108 42.6
Gorai.007G212200 Gossypium raimondii HOM05D002458 ORTHO05D002603 1.9e-06 56.6 99 42.4
MD15G1282400 Malus domestica HOM05D002458 ORTHO05D002603 1.9e-06 56.6 114 39.5
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 1.9e-06 56.6 118 43.2
SGA_v2.0_scaffold204G41574 Striga asiatica HOM05D002458 ORTHO05D002603 1.9e-06 56.6 88 45.5
arahy.Tifrunner.gnm1.ann1.Z85DSV Arachis hypogaea HOM05D002458 ORTHO05D002603 2.4e-06 56.2 126 39.7
HanXRQChr04g0128221 Helianthus annuus HOM05D002458 ORTHO05D002603 2.4e-06 56.2 130 34.6
Lsat_1_v5_gn_5_112820 Lactuca sativa HOM05D002458 ORTHO05D002603 2.4e-06 56.2 118 38.1
SGA_v2.0_scaffold13G06588 Striga asiatica HOM05D002458 ORTHO05D002603 2.4e-06 56.2 114 38.6
Eucgr.H02010 Eucalyptus grandis HOM05D002458 ORTHO05D002603 3.2e-06 55.8 113 45.1
Migut.H00441 Erythranthe guttata HOM05D002458 ORTHO05D002603 4.2e-06 55.5 78 43.6
SalBow6G2746 Salvia bowleyana HOM05D002458 ORTHO05D002603 4.2e-06 55.5 104 42.3
TAR381G1245 Trochodendron aralioides HOM05D002458 ORTHO05D002603 4.2e-06 55.5 97 39.2
DCAR_010901 Daucus carota HOM05D001349 ORTHO05D008727 5.5e-06 55.1 142 35.2
TWI75G1467 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 5.5e-06 55.1 81 42.0
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 7.1e-06 54.7 112 38.4
CAN.G836.76 Capsicum annuum HOM05D002458 ORTHO05D002603 7.1e-06 54.7 127 40.2
ClCG05G010020 Citrullus lanatus HOM05D002458 ORTHO05D002603 7.1e-06 54.7 68 48.5
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 7.1e-06 54.7 109 40.4
Lalb_Chr09g0323131 Lupinus albus HOM05D002458 ORTHO05D002603 7.1e-06 54.7 114 38.6
Rhsim05G0083500 Rhododendron simsii HOM05D002458 ORTHO05D002603 7.1e-06 54.7 110 40.9
Cpa.g.sc55.162 Carica papaya HOM05D002458 ORTHO05D002603 9.3e-06 54.3 113 39.8
AUR62001940 Chenopodium quinoa HOM05D002458 ORTHO05D002603 9.3e-06 54.3 123 36.6
MD02G1170900 Malus domestica HOM05D002458 ORTHO05D002603 9.3e-06 54.3 111 39.6
Sed0017415 Sechium edule HOM05D002458 ORTHO05D002603 9.3e-06 54.3 126 38.9


User provided reference genes

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