Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 3730.3 1891 100.0
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 3328.1 1895 89.4
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 3307.7 1894 88.9
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 3205.6 1896 85.9
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 3179.4 1900 85.6
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 3143.2 1905 84.4
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3017.6 1904 81.9
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 3015.3 1903 81.9
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 3011.9 1903 81.8
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3009.6 1903 81.8
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 2991.4 1905 81.0
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 2986.4 1903 81.0
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 2955.6 1897 79.5
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 2623.2 1915 71.1
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1778.5 1995 50.5
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1772.7 2018 50.8
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1747.3 2046 49.1
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1745.7 2006 49.3
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1744.2 2003 49.8
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1743.8 2005 49.6
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1743.4 2012 49.2
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1739.5 2017 48.9
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1739.2 1989 50.2
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1739.2 1948 50.3
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1735.3 1999 50.0
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1731.5 2000 49.9
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1725.7 2012 49.5
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1721.8 2026 49.6
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1719.9 2006 49.4
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1713.0 2007 48.7
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1694.9 1997 49.3
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1685.6 2002 48.2
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1684.5 2016 48.7
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1677.9 2041 48.3
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1674.8 1998 49.1
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1672.1 2026 48.0
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1665.6 2012 48.1
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1662.5 1974 49.2
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1659.8 2023 48.2
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1654.4 2027 47.6
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1651.0 2021 47.7
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1639.8 2001 48.2
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1632.8 1997 46.5
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1627.1 1998 46.3
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1615.5 1978 47.1
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1612.4 2010 47.1
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1606.7 2022 46.6
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1592.0 1995 46.7
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1589.7 2032 46.9
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1584.7 2029 46.0
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1581.2 1991 46.3
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1577.8 1991 45.9
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1573.1 2004 46.3
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1570.1 2029 46.5
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1567.7 1998 45.7
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1564.7 1987 45.9
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1550.4 1992 45.1
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1544.3 1992 45.0
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1543.5 1986 45.7
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1535.4 2013 44.8
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1523.5 1988 45.5
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1521.9 1998 45.0
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1516.1 2042 44.6
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1494.6 1998 44.9
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1454.1 2039 44.0
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1454.1 2014 43.9
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1447.2 2005 44.2
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1446.8 2002 44.2
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1443.7 1912 44.5
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1441.8 2003 44.0
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1433.7 2026 43.1
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1432.2 1987 42.8
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1429.8 1984 43.6
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1427.9 2024 42.7
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1416.7 1915 44.5
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1402.1 1933 43.4
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1390.2 2011 42.3
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1384.4 2064 42.3
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1350.9 1910 42.7
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1349.7 2008 41.9
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1349.7 1914 43.4
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1348.2 1879 42.3
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1340.5 1904 42.4
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1321.6 2125 40.0
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1303.1 1997 41.7
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1297.3 1711 45.1
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1281.5 1717 45.1
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1266.9 1916 42.0
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1244.6 1446 49.1
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1232.2 1449 48.4
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1225.7 1969 40.4
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1183.3 1770 41.8
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1135.9 2072 37.0
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1075.8 1726 39.2
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 2.4e-308 1063.1 1967 34.5
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 2.2e-269 933.7 1653 37.3
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 2.4e-263 913.7 1159 46.2
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 9.9e-262 908.3 2088 32.7
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 6.1e-235 819.3 1452 36.0
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 8.5e-229 798.9 2149 30.7
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.2e-228 797.0 1666 33.9
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 1.6e-198 698.4 2072 28.9
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 8.9e-186 656.0 1942 29.2
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 8.9e-178 629.4 677 53.0
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 6.4e-152 543.5 1826 27.1
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.7e-149 535.4 1168 34.4
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 2.3e-149 535.0 1667 27.7
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.1e-134 485.3 435 58.6
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.4e-130 471.9 393 59.5
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 4.1e-122 444.5 348 66.7
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 3.7e-115 421.4 379 54.6
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 2.8e-107 395.2 288 68.8
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.6e-102 379.4 353 58.4
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 5.0e-96 357.8 274 65.0
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.5e-95 355.5 433 48.0
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.7e-94 351.3 989 29.7
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 7.8e-73 280.8 198 67.2
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 7.3e-63 247.7 366 40.2
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 6.8e-61 241.1 274 49.6
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.2e-60 240.4 498 35.5
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 2.9e-51 209.1 235 52.3
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 2.1e-46 193.0 198 54.0
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 2.6e-44 186.0 363 33.3
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 5.1e-40 171.8 180 53.9
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 6.9e-37 161.4 307 34.5
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 1.4e-34 153.7 173 50.3
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.7e-27 130.2 83 67.5
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 4.9e-27 128.6 211 37.0
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-25 121.7 597 23.3
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 2.1e-22 113.2 310 27.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 2.6e-20 106.3 68 77.9
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 4.5e-20 105.5 68 77.9
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 1.0e-19 104.4 64 79.7
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.9e-18 100.1 260 28.1
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 9.3e-18 97.8 68 72.1
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.6e-17 95.5 69 65.2
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-16 93.2 101 47.5
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 8.7e-16 91.3 99 46.5
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 7.4e-15 88.2 63 68.3
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.3e-14 87.4 56 82.1
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 4.8e-14 85.5 57 77.2
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 6.9e-13 81.6 126 38.9
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.9e-07 63.5 52 55.8


User provided reference genes

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