Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 1.1e-37 159.5 79 100.0
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 3.9e-35 151.0 78 93.6
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 6.6e-35 150.2 81 93.8
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.5e-34 149.1 81 92.6
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-34 148.7 81 91.4
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-34 148.7 81 91.4
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.3e-34 147.9 81 91.4
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 5.6e-34 147.1 81 90.1
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 5.6e-34 147.1 81 90.1
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 5.6e-34 147.1 82 91.5
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 7.3e-34 146.7 81 90.1
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-33 145.2 82 89.0
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-33 145.2 82 89.0
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-33 145.2 82 89.0
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 2.1e-33 145.2 82 89.0
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 2.1e-33 145.2 82 89.0
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 6.2e-33 143.7 82 87.8
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 2.4e-32 141.7 83 86.7
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.2e-31 139.4 85 83.5
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 2.6e-31 138.3 83 84.3
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 2.6e-31 138.3 83 84.3
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 4.4e-31 137.5 82 85.4
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 7.6e-31 136.7 79 87.3
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.2e-28 129.4 81 81.5
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.5e-28 127.9 79 81.0
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.6e-28 127.5 79 81.0
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 6.0e-28 127.1 79 81.0
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-27 126.3 79 79.7
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-27 126.3 79 79.7
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.0e-27 126.3 79 79.7
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-27 126.3 79 79.7
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.0e-27 126.3 79 81.0
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 3.0e-27 124.8 77 80.5
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 5.1e-27 124.0 77 79.2
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 5.1e-27 124.0 77 79.2
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 5.1e-27 124.0 77 79.2
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 5.1e-27 124.0 79 78.5
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 8.7e-27 123.2 79 78.5
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 8.7e-27 123.2 79 78.5
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 8.7e-27 123.2 79 78.5
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.5e-26 122.5 79 78.5
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-26 122.1 79 78.5
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.5e-26 121.7 75 80.0
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.5e-26 121.7 75 80.0
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.4e-23 111.3 81 69.1
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.2e-20 102.8 75 69.3
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 2.8e-17 91.7 73 68.5
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 4.8e-17 90.9 79 60.8
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 8.1e-17 90.1 79 62.0
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 1.4e-16 89.4 79 62.0
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.8e-16 89.0 79 60.8
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 1.8e-16 89.0 73 64.4
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.4e-16 88.6 79 60.8
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 2.4e-16 88.6 79 63.3
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.4e-16 88.6 74 66.2
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.4e-16 88.6 72 61.1
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.4e-16 88.6 72 61.1
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 3.1e-16 88.2 72 61.1
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.1e-16 88.2 72 61.1
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 6.9e-16 87.0 79 65.8
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.5e-15 85.9 73 63.0
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.5e-15 85.9 73 63.0
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.0e-15 85.5 73 63.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.0e-15 85.5 72 63.9
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 3.4e-15 84.7 80 58.8
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 4.5e-15 84.3 79 58.2
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.5e-15 84.3 72 62.5
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 5.8e-15 84.0 72 58.3
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 5.8e-15 84.0 73 61.6
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 5.8e-15 84.0 78 57.7
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 7.6e-15 83.6 73 61.6
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 7.6e-15 83.6 73 58.9
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 7.6e-15 83.6 73 58.9
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 9.9e-15 83.2 73 60.3
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.3e-14 82.8 78 62.8
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.7e-14 82.4 70 62.9
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-14 82.4 73 58.9
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.2e-14 82.0 81 56.8
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 2.9e-14 81.6 72 59.7
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.9e-14 81.6 80 56.2
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 3.8e-14 81.3 80 58.8
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 3.8e-14 81.3 72 59.7
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 3.8e-14 81.3 78 60.3
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 3.8e-14 81.3 78 60.3
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 3.8e-14 81.3 73 54.8
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 3.8e-14 81.3 73 58.9
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 4.9e-14 80.9 80 58.8
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 4.9e-14 80.9 74 60.8
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 4.9e-14 80.9 73 58.9
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 4.9e-14 80.9 76 56.6
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 8.4e-14 80.1 73 60.3
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 8.4e-14 80.1 80 57.5
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.1e-13 79.7 80 53.8
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.1e-13 79.7 72 55.6
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.1e-13 79.7 74 60.8
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 1.4e-13 79.3 80 57.5
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.4e-13 79.3 80 57.5
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.4e-13 79.3 72 58.3
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 1.4e-13 79.3 73 54.8
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.9e-13 79.0 73 56.2
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.9e-13 79.0 73 54.8
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 2.4e-13 78.6 79 55.7
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 2.4e-13 78.6 85 50.6
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 2.4e-13 78.6 78 59.0
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 2.4e-13 78.6 80 56.2
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.2e-13 78.2 80 57.5
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 5.4e-13 77.4 74 55.4
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 9.3e-13 76.6 79 54.4
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 1.2e-12 76.3 70 52.9
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.6e-12 75.9 82 51.2
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 2.1e-12 75.5 76 55.3
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.1e-12 75.5 70 55.7
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 3.5e-12 74.7 70 55.7
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 6.0e-12 73.9 70 55.7
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 6.0e-12 73.9 74 52.7
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 7.9e-12 73.6 73 53.4
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.0e-11 73.2 73 53.4
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.0e-11 73.2 79 53.2
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.3e-11 72.8 73 58.9
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 2.3e-11 72.0 78 52.6
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 2.3e-11 72.0 70 54.3
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 5.1e-11 70.9 75 52.0
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 8.7e-11 70.1 72 55.6
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 1.1e-10 69.7 80 51.2
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.5e-10 69.3 70 52.9
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.5e-10 68.6 70 51.4
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 3.3e-10 68.2 71 50.7
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 5.6e-10 67.4 72 47.2
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 9.6e-10 66.6 69 50.7
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.3e-09 66.2 82 42.7
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.1e-09 65.5 82 47.6
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.7e-09 64.7 72 48.6
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 3.7e-09 64.7 71 46.5
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 3.7e-09 64.7 70 50.0
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 4.8e-09 64.3 77 42.9
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 4.8e-09 64.3 70 50.0
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 8.1e-09 63.5 68 51.5
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 8.1e-09 63.5 72 48.6
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 2.4e-08 62.0 83 42.2
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.0e-08 61.2 75 49.3
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 4.0e-08 61.2 72 45.8
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 6.9e-08 60.5 75 49.3
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 2.0e-07 58.9 73 45.2
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 2.6e-07 58.5 61 55.7
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 4.5e-07 57.8 72 44.4
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 8.4e-06 53.5 76 43.4


User provided reference genes

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