Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 0.0e+00 1954.9 1088 100.0
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1758.4 1091 86.9
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1752.6 1092 87.6
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1721.1 1089 84.9
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1699.9 1090 83.3
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1630.5 1092 83.2
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1625.1 1092 82.8
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1591.2 1063 83.4
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 0.0e+00 1578.5 1091 81.0
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1577.0 1086 80.9
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1521.5 1120 74.8
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1129.4 1096 58.5
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1119.8 1089 56.5
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 0.0e+00 1115.5 652 89.0
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1107.8 1092 57.8
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1102.8 1092 57.2
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1101.3 1140 55.6
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1099.0 1089 57.2
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1098.6 1084 55.9
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1098.2 1093 53.5
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1098.2 1092 56.4
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1084.3 1094 56.0
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1083.2 1089 55.8
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1075.5 1099 56.3
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 7.4e-312 1073.5 1097 55.3
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 1.5e-311 1073.2 1097 55.2
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 3.0e-311 1072.0 1097 56.0
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 1.3e-309 1066.6 1095 52.8
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 2.8e-309 1065.4 1093 55.1
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 3.6e-309 1065.1 1102 55.5
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 1.1e-308 1063.5 1106 52.9
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.5e-307 1059.7 1097 55.8
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 2.0e-307 1059.3 1096 54.7
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 2.0e-307 1059.3 1102 53.1
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 2.2e-306 1055.8 972 56.0
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 3.8e-306 1055.0 970 56.5
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 1.0e-303 1047.0 1098 54.1
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 2.3e-303 1045.8 1089 53.7
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 3.0e-303 1045.4 1098 54.6
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 5.1e-303 1044.6 1103 53.1
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 2.5e-302 1042.3 1089 54.4
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 1.8e-300 1036.2 1088 53.8
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 4.0e-300 1035.0 984 56.2
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 6.9e-300 1034.2 1105 52.4
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 1.2e-299 1033.5 1092 54.8
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 1.5e-299 1033.1 1105 53.7
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 3.8e-298 1028.5 1093 52.4
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 1.8e-295 1019.6 1098 53.2
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 6.7e-295 1017.7 970 54.8
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 4.8e-293 1011.5 1057 54.1
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 4.5e-291 1005.0 1105 54.7
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 2.2e-290 1002.7 1093 53.3
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 2.1e-288 996.1 1096 53.0
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 6.1e-288 994.6 1087 50.8
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 6.1e-288 994.6 945 54.6
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 2.2e-285 986.1 1092 51.9
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 2.4e-284 982.6 1098 50.3
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 1.9e-281 973.0 1098 50.5
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 7.2e-281 971.1 980 53.0
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 1.6e-280 969.9 1093 51.1
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 6.3e-277 958.0 1094 51.4
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 2.0e-275 953.0 1094 51.3
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 8.5e-274 947.6 1087 52.2
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 1.2e-272 943.7 1085 51.3
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 1.4e-271 940.3 1084 51.0
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 1.8e-271 939.9 970 51.3
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 1.1e-270 937.2 1010 50.7
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 6.5e-266 921.4 982 51.9
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 1.5e-265 920.2 1102 49.5
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 2.7e-264 916.0 971 51.7
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 2.0e-262 909.8 1093 50.5
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 5.7e-262 908.3 1198 44.8
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 3.8e-258 895.6 970 49.7
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 1.8e-252 876.7 1092 45.9
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 1.6e-251 873.6 1089 49.9
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.7e-251 872.8 899 50.4
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 7.7e-251 871.3 971 48.4
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 2.5e-249 866.3 1159 46.8
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 1.7e-245 853.6 968 47.8
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 5.4e-244 848.6 1092 47.5
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 8.9e-239 831.2 994 46.9
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 1.9e-233 813.5 973 47.2
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.1e-208 730.3 1106 43.7
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 2.4e-199 700.3 716 52.9
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.2e-198 698.0 611 60.6
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.6e-195 687.6 990 39.7
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.0e-183 645.2 983 38.8
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.0e-183 645.2 983 38.8
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.4e-182 643.3 1011 37.5
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 3.8e-173 613.2 928 38.1
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 4.8e-168 596.3 443 77.7
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 7.7e-150 535.8 941 34.3
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 3.5e-142 510.4 501 51.3
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 5.0e-141 506.5 432 60.6
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 1.1e-140 505.4 622 48.4
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.3e-108 397.5 430 47.0
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 3.5e-94 350.9 666 32.4
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.5e-94 350.9 465 40.2
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.6e-75 288.9 337 48.1
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 1.1e-66 259.6 287 50.9
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 5.8e-65 253.8 250 52.0
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 3.8e-64 251.1 407 42.8
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 6.5e-64 250.4 443 42.2
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 1.8e-61 242.3 963 25.8
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 8.2e-59 233.4 220 51.4
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 1.4e-58 232.6 697 27.0
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 8.5e-56 223.4 399 31.8
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.3e-48 199.5 160 69.4
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 2.5e-47 195.3 214 73.8
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 1.4e-42 179.5 307 37.5
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 3.5e-41 174.9 160 56.9
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 1.0e-32 146.7 212 44.8
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.8e-32 144.8 87 75.9
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 2.0e-28 132.5 91 67.0
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 2.2e-27 129.0 181 45.9
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.3e-24 119.8 138 47.8
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 8.0e-22 110.5 120 45.0
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 5.2e-21 107.8 135 47.4
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 5.7e-20 104.4 115 40.0
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 2.2e-19 102.4 111 50.5
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.7e-19 101.7 95 57.9
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.4e-18 99.0 101 55.4
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.7e-17 95.5 119 40.3
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.1e-15 90.1 85 55.3
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.5e-15 89.0 104 41.3
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 1.6e-14 86.3 125 36.8
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 6.1e-14 84.3 87 41.4
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 6.1e-14 84.3 87 41.4
MCO08G239 Micromonas commoda HOM05D002786 ORTHO05D003493 1.8e-13 82.8 716 21.4
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 7.5e-12 77.4 678 20.9
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 9.8e-12 77.0 88 45.5
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 2.8e-11 75.5 125 34.4
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 3.2e-10 72.0 682 19.9
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 3.2e-10 72.0 48 62.5
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 5.4e-10 71.2 469 22.0
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 7.0e-10 70.9 676 19.5
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 3.5e-09 68.6 680 20.6
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 1.3e-08 66.6 676 19.2
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 2.9e-08 65.5 63 49.2
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 6.6e-08 64.3 65 44.6
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 6.6e-08 64.3 684 20.0
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 7.3e-07 60.8 693 20.6
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.2e-06 60.1 647 20.2
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 6.1e-06 57.8 71 45.1


User provided reference genes

Program Settings