Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 4.8e-272 940.6 499 100.0
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 1.2e-227 793.1 499 87.0
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 2.1e-227 792.3 501 86.6
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 2.0e-214 749.2 506 82.0
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 7.3e-196 687.6 502 78.3
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 6.6e-181 637.9 503 73.2
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 1.2e-179 633.6 505 73.7
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 2.4e-175 619.4 505 72.7
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 3.0e-165 585.9 506 70.0
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 2.8e-163 579.3 511 66.5
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 1.7e-160 570.1 505 68.5
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 1.7e-157 560.1 505 68.3
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 7.9e-126 454.9 287 87.5
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 5.3e-122 442.2 529 55.8
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 6.5e-120 435.3 535 55.3
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 5.1e-117 425.6 544 54.2
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 1.7e-115 420.6 524 54.0
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 1.3e-112 411.0 529 51.6
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 1.3e-112 411.0 526 53.4
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 8.5e-112 408.3 533 52.2
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 1.0e-109 401.4 533 50.8
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.4e-108 396.0 518 52.5
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 4.4e-108 396.0 568 50.0
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 5.7e-108 395.6 569 49.9
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 1.3e-107 394.4 516 52.9
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 3.7e-107 392.9 514 51.2
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 4.1e-106 389.4 526 50.8
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 2.6e-105 386.7 535 50.7
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 3.5e-105 386.3 542 50.6
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 1.7e-104 384.0 532 50.4
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 2.2e-104 383.6 535 50.3
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.9e-104 383.3 511 49.9
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 6.5e-104 382.1 511 49.9
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 6.5e-104 382.1 511 49.9
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 8.5e-104 381.7 526 51.3
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.1e-103 381.3 545 49.7
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 3.2e-103 379.8 472 53.6
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 3.6e-102 376.3 534 49.4
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 1.4e-101 374.4 553 47.0
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 6.8e-101 372.1 529 48.6
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 6.8e-101 372.1 537 49.0
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 1.2e-100 371.3 544 48.7
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.2e-100 371.3 488 50.8
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.5e-100 370.9 537 48.2
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 2.0e-100 370.5 509 49.7
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 4.4e-100 369.4 533 47.5
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 7.5e-100 368.6 551 47.7
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 9.8e-100 368.2 536 49.1
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.7e-99 367.5 509 51.5
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 1.7e-99 367.5 523 48.9
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 8.3e-99 365.2 551 48.5
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 1.2e-97 361.3 544 48.2
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 2.7e-97 360.1 526 48.9
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 3.5e-97 359.8 527 48.8
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 4.5e-97 359.4 532 47.9
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 1.3e-96 357.8 529 47.1
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.7e-96 357.5 503 49.3
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 6.5e-96 355.5 553 47.7
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 6.5e-96 355.5 505 48.5
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 1.5e-95 354.4 525 47.4
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 3.2e-95 353.2 474 50.0
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.2e-95 353.2 532 46.6
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 2.1e-94 350.5 484 49.8
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.7e-94 349.4 532 45.9
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 5.2e-93 345.9 511 47.0
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 1.5e-92 344.4 473 50.7
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.7e-91 340.9 562 45.6
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 8.3e-91 338.6 517 46.8
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 1.8e-90 337.4 585 44.8
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 7.0e-90 335.5 516 46.9
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 1.6e-89 334.3 523 47.6
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 2.0e-89 334.0 474 48.7
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 5.9e-89 332.4 507 48.3
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.3e-88 330.5 508 47.4
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 2.9e-88 330.1 532 46.8
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 6.6e-88 328.9 525 45.3
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 9.5e-87 325.1 459 48.8
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 6.1e-86 322.4 522 47.1
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 6.1e-86 322.4 496 47.4
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 8.0e-86 322.0 507 45.0
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 3.0e-85 320.1 520 45.6
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 9.8e-84 315.1 537 44.3
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 4.9e-83 312.8 449 50.1
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 2.3e-80 303.9 486 46.7
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 2.1e-78 297.4 516 43.6
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 4.0e-77 293.1 473 43.8
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 8.9e-77 292.0 468 44.9
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 1.2e-76 291.6 492 45.9
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 2.2e-75 287.3 477 45.5
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 2.2e-75 287.3 473 43.3
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 2.2e-75 287.3 475 43.6
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 2.9e-75 287.0 548 41.1
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 4.9e-75 286.2 520 43.3
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 8.3e-75 285.4 526 42.0
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 4.6e-73 279.6 573 39.3
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 3.9e-72 276.6 551 42.5
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 5.0e-72 276.2 526 43.2
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 5.0e-72 276.2 539 40.3
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 3.1e-69 266.9 504 41.3
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 2.2e-67 260.8 310 53.2
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 3.5e-65 253.4 525 40.4
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 5.6e-63 246.1 298 50.3
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.1e-62 244.2 304 51.0
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 5.2e-61 239.6 584 36.5
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 1.2e-60 238.4 301 49.5
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 3.3e-55 220.3 545 35.2
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 1.1e-53 215.3 328 44.8
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.0e-52 211.1 340 42.9
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 7.6e-52 209.1 160 66.2
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 1.0e-48 198.7 513 33.3
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 1.9e-47 194.5 308 44.5
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 3.1e-45 187.2 520 35.6
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 1.3e-43 181.8 461 33.4
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.0e-37 160.2 181 55.8
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 2.1e-33 147.9 299 38.5
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 6.0e-33 146.4 135 61.5
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.0e-32 145.6 169 54.4
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 3.9e-32 143.7 94 69.1
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.4e-29 134.4 160 53.8
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 1.4e-26 125.2 205 39.5
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 1.6e-25 121.7 432 32.2
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 3.9e-24 117.1 196 42.9
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 4.3e-23 113.6 591 28.4
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.3e-22 112.1 69 76.8
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 9.0e-21 105.9 194 38.1
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.2e-20 105.5 69 73.9
BcaC05g28855 Brassica carinata HOM05D005806 ORTHO05D007119 3.4e-20 104.0 147 51.0
FAN15G2853 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.2e-14 84.7 57 68.4
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 8.5e-11 72.8 110 50.9
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-10 71.6 84 40.5
CANSAT80G2848 Cannabis sativa HOM05D001310 ORTHO05D001283 2.5e-10 71.2 122 37.7
EL10Ac5g11565 Beta vulgaris HOM05D001310 ORTHO05D001283 1.2e-09 68.9 122 36.1
HanXRQChr05g0142631 Helianthus annuus HOM05D001310 ORTHO05D023385 4.6e-09 67.0 143 35.0
DCAR_014505 Daucus carota HOM05D001310 ORTHO05D001283 6.1e-09 66.6 122 34.4
Lj5A239G80 Lonicera japonica HOM05D001310 ORTHO05D001283 6.1e-09 66.6 120 33.3
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 7.9e-09 66.2 142 34.5
MD14G1236500 Malus domestica HOM05D001310 ORTHO05D001283 7.9e-09 66.2 122 35.2
Lj5C158T11 Lonicera japonica HOM05D001310 ORTHO05D001283 1.0e-08 65.9 121 34.7
Medtr8g107280 Medicago truncatula HOM05D001310 ORTHO05D001283 1.0e-08 65.9 122 34.4
Nitab4.5_0004556g0020 Nicotiana tabacum HOM05D001310 ORTHO05D001283 1.8e-08 65.1 122 34.4
SGA_v2.0_scaffold36G14382 Striga asiatica HOM05D001310 ORTHO05D001283 1.8e-08 65.1 122 32.8
SEGI_22675 Sequoiadendron giganteum HOM05D001310 ORTHO05D001283 2.3e-08 64.7 125 32.0
Lsat_1_v5_gn_8_301 Lactuca sativa HOM05D001310 ORTHO05D001283 3.0e-08 64.3 143 33.6
PRCOL_00000793 Prasinoderma coloniale HOM05D002462 ORTHO05D007680 3.0e-08 64.3 124 29.0
Peaxi162Scf00683g00463 Petunia axillaris HOM05D001310 ORTHO05D001283 3.9e-08 63.9 119 34.5
MD06G1227100 Malus domestica HOM05D001310 ORTHO05D001283 5.1e-08 63.5 122 35.2
VMungo0251G0933 Vigna mungo HOM05D001310 ORTHO05D001283 5.1e-08 63.5 122 33.6
Nitab4.5_0003401g0010 Nicotiana tabacum HOM05D001310 ORTHO05D001283 6.7e-08 63.2 122 33.6
Phvul.002G330000 Phaseolus vulgaris HOM05D001310 ORTHO05D001283 6.7e-08 63.2 122 33.6
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 8.8e-08 62.8 122 32.0
CiPaw.05G034800 Carya illinoinensis HOM05D001310 ORTHO05D001283 1.1e-07 62.4 117 31.6
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 1.1e-07 62.4 128 28.1
COL.COLO4_04375 Corchorus olitorius HOM05D001310 ORTHO05D001283 1.1e-07 62.4 122 32.0
Haze_11686 Corylus avellana HOM05D000371 ORTHO05D001484 1.1e-07 62.4 126 32.5
Sopen10g017560 Solanum pennellii HOM05D001310 ORTHO05D001283 1.1e-07 62.4 131 32.1
Solyc10g047300.2 Solanum lycopersicum HOM05D001310 ORTHO05D001283 1.5e-07 62.0 131 32.1
THA.LOC104820350 Tarenaya hassleriana HOM05D001310 ORTHO05D001283 1.5e-07 62.0 119 34.5
Migut.B00605 Erythranthe guttata HOM05D001310 ORTHO05D001283 2.0e-07 61.6 122 33.6
Solyc03g118690.4 Solanum lycopersicum HOM05D001310 ORTHO05D001283 2.6e-07 61.2 122 33.6
Zm00001eb255310 Zea mays HOM05D001310 ORTHO05D001283 2.6e-07 61.2 117 31.6
Sopen03g037650 Solanum pennellii HOM05D001310 ORTHO05D001283 3.3e-07 60.8 119 34.5
PGSC0003DMG400005752 Solanum tuberosum HOM05D001310 ORTHO05D001283 4.4e-07 60.5 119 34.5
ECA233G3392 Erigeron canadensis HOM05D001310 ORTHO05D001283 5.7e-07 60.1 121 33.9
ATR0564G362 Amborella trichopoda HOM05D001310 ORTHO05D001283 7.4e-07 59.7 122 32.8
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 7.4e-07 59.7 128 27.3
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 7.4e-07 59.7 163 28.8
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 7.4e-07 59.7 128 28.1
Sc18g0006830 Simmondsia chinensis HOM05D001310 ORTHO05D001283 7.4e-07 59.7 117 32.5
CAN.G1.39 Capsicum annuum HOM05D001310 ORTHO05D001283 2.8e-06 57.8 117 31.6
Aqoxy4G03046 Aquilegia oxysepala HOM05D002273 ORTHO05D004485 4.8e-06 57.0 119 26.1
TWI38G1376 Tripterygium wilfordii HOM05D006651 ORTHO05D008231 4.8e-06 57.0 111 28.8
Cfa008668 Carpinus fangiana HOM05D000371 ORTHO05D001484 6.3e-06 56.6 119 32.8
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 6.3e-06 56.6 199 26.6
Dinv19605 Davidia involucrata HOM05D006651 ORTHO05D008231 8.2e-06 56.2 111 27.9
Os02g0754500 Oryza sativa ssp. japonica HOM05D001310 ORTHO05D001283 8.2e-06 56.2 119 29.4


User provided reference genes

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