Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 3.0e-125 451.8 225 100.0
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 9.4e-119 430.3 227 95.2
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.0e-117 424.9 222 93.7
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-116 423.3 222 94.1
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.2e-116 423.3 222 94.1
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 2.6e-116 422.2 222 93.7
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 9.8e-116 420.2 222 94.1
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 2.2e-115 419.1 222 92.8
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.8e-114 416.0 222 91.9
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 9.1e-114 413.7 222 92.8
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.5e-108 394.0 222 86.9
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.2e-107 392.5 222 86.9
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.9e-107 391.3 222 86.0
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.9e-107 391.3 222 86.5
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 3.1e-106 388.7 222 85.6
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 5.4e-106 387.9 222 86.5
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 9.1e-106 387.1 222 85.6
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.6e-105 386.3 222 85.6
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 4.5e-105 384.8 222 84.7
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 4.5e-105 384.8 222 84.7
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 7.7e-105 384.0 222 84.7
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 3.8e-104 381.7 221 83.3
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 5.4e-98 361.3 222 80.6
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 5.4e-98 361.3 222 80.6
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.7e-97 359.0 270 70.0
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 7.8e-97 357.5 223 80.7
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.8e-94 349.0 220 75.5
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.4e-93 346.7 220 75.0
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 3.1e-93 345.5 220 75.9
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 2.6e-92 342.4 216 75.9
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 5.8e-92 341.3 219 73.5
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.3e-91 340.1 220 73.6
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 1.3e-91 340.1 220 74.1
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.7e-91 339.7 218 75.2
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 2.2e-91 339.3 220 74.1
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 3.7e-91 338.6 220 73.6
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 4.9e-91 338.2 220 73.6
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 4.9e-91 338.2 216 74.5
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 8.3e-91 337.4 220 73.2
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 8.3e-91 337.4 220 73.2
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.4e-90 336.7 220 73.2
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.9e-90 336.3 217 73.3
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.2e-90 335.5 220 72.7
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 4.1e-90 335.1 221 73.3
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 5.4e-90 334.7 218 72.5
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.4e-90 334.7 255 65.1
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 9.2e-90 334.0 220 72.3
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.2e-89 333.6 215 73.5
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 4.6e-89 331.6 220 71.4
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 6.0e-89 331.3 220 73.2
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 7.8e-89 330.9 217 72.8
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.3e-88 330.1 221 71.9
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.3e-88 330.1 215 73.5
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.3e-88 329.3 217 72.4
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.3e-88 329.3 217 72.4
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 3.0e-88 328.9 220 71.8
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 3.0e-88 328.9 217 72.8
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 3.0e-88 328.9 218 72.5
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 5.0e-88 328.2 221 70.6
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 5.0e-88 328.2 221 71.5
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 5.0e-88 328.2 217 71.0
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 6.6e-88 327.8 221 71.5
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 6.6e-88 327.8 216 71.3
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 6.6e-88 327.8 220 71.4
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 8.6e-88 327.4 216 71.3
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.5e-87 326.6 214 73.4
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.5e-87 326.6 221 70.1
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.5e-87 326.6 217 70.5
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.9e-87 326.2 221 71.9
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 2.5e-87 325.9 217 71.9
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 2.5e-87 325.9 220 72.3
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 3.3e-87 325.5 214 73.8
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 7.3e-87 324.3 217 70.0
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.2e-86 323.6 222 71.6
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.2e-86 323.6 222 70.3
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 1.6e-86 323.2 222 70.3
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 2.8e-86 322.4 221 71.0
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 3.6e-86 322.0 214 71.5
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 4.7e-86 321.6 222 70.3
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 6.2e-86 321.2 215 71.6
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 8.1e-86 320.9 215 71.6
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 8.1e-86 320.9 220 69.1
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.1e-85 320.5 217 69.6
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.4e-85 320.1 215 72.1
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.4e-85 320.1 216 72.7
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.8e-85 319.7 222 69.8
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.8e-85 319.7 220 70.5
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.3e-85 319.3 221 71.9
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 5.2e-85 318.2 215 71.2
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 6.8e-85 317.8 217 70.0
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.5e-84 316.6 220 69.5
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 3.4e-84 315.5 212 70.3
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 3.4e-84 315.5 219 68.0
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.7e-83 313.2 217 67.7
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 2.2e-83 312.8 235 67.2
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.1e-82 310.5 221 67.4
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 2.1e-81 306.2 264 60.2
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 2.7e-81 305.8 221 66.1
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.7e-80 303.1 185 77.8
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.3e-80 302.8 215 68.4
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.3e-80 302.8 213 69.5
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 9.5e-79 297.4 206 69.9
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 2.1e-78 296.2 220 66.4
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 4.0e-77 292.0 219 66.7
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.2e-74 280.8 213 65.3
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.2e-74 280.8 214 65.0
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 2.7e-73 279.3 221 61.5
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 3.5e-73 278.9 220 61.8
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 6.0e-73 278.1 217 62.2
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 5.1e-72 275.0 223 60.1
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 4.7e-70 268.5 219 61.6
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 8.1e-70 267.7 222 59.5
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.1e-69 267.3 219 61.2
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 5.2e-69 265.0 181 70.7
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.7e-65 252.7 180 67.8
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.9e-59 232.6 216 54.6
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.3e-56 223.0 144 74.3
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.4e-53 213.8 109 97.2
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 3.8e-51 205.7 131 74.8
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.8e-51 205.7 229 46.3
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.8e-46 188.7 116 82.8
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 6.2e-46 188.3 130 68.5
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.4e-45 186.4 123 71.5
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.4e-45 186.4 126 72.2
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.9e-43 178.7 91 93.4
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.4e-42 177.2 146 60.3
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 5.5e-42 175.3 120 70.8
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.1e-39 167.5 124 65.3
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.5e-36 157.1 92 77.2
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 1.9e-34 150.2 129 61.2
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.1e-33 146.7 92 75.0
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.4e-29 133.3 164 44.5
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 1.2e-28 131.0 207 40.1
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.6e-28 129.8 91 67.0
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 6.5e-27 125.2 214 36.4
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 3.2e-26 122.9 94 61.7
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 3.2e-26 122.9 214 36.9
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.2e-26 122.9 214 35.5
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 5.5e-26 122.1 93 68.8
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 7.9e-25 118.2 77 71.4
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 1.5e-23 114.0 197 35.5
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.0e-23 113.6 192 39.1
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 2.5e-23 113.2 195 38.5
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 9.1e-21 104.8 71 69.0
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 5.9e-20 102.1 88 58.0
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 5.9e-20 102.1 216 33.3
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 5.9e-20 102.1 212 31.1
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.0e-19 101.3 92 59.8
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 1.1e-18 97.8 71 60.6
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.9e-18 97.1 170 34.7
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.5e-18 96.7 71 67.6
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 4.2e-18 95.9 92 56.5
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.0e-16 91.3 60 68.3
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 1.1e-15 87.8 70 57.1
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 9.7e-15 84.7 58 72.4
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.3e-14 84.3 81 55.6
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.2e-14 83.6 55 65.5
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 8.2e-14 81.6 68 57.4
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.8e-13 80.5 56 64.3
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 2.4e-13 80.1 46 78.3
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.0e-12 77.0 53 71.7
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 2.9e-11 73.2 81 45.7
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 6.5e-11 72.0 65 53.8
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.1e-10 71.2 64 54.7
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.5e-10 70.1 59 57.6
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 1.2e-09 67.8 66 51.5
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 6.7e-08 62.0 57 54.4
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 4.4e-07 59.3 48 56.2
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 5.7e-07 58.9 47 57.4


User provided reference genes

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