Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 2.0e-82 309.3 190 100.0
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.8e-54 216.5 190 65.8
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.4e-54 216.1 190 71.6
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 9.0e-54 214.2 184 67.4
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 3.4e-37 159.1 188 52.7
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 7.1e-35 151.4 186 49.5
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.0e-33 147.5 186 47.8
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.4e-30 136.3 127 57.5
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.1e-30 136.0 187 46.0
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 3.1e-30 136.0 185 47.0
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 5.3e-30 135.2 187 47.1
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 9.0e-30 134.4 184 46.7
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 1.2e-29 134.0 187 46.5
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.2e-29 134.0 128 57.8
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 4.5e-29 132.1 183 53.6
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 4.5e-29 132.1 127 58.3
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 5.9e-29 131.7 124 54.8
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 7.6e-29 131.3 124 55.6
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 7.6e-29 131.3 133 55.6
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 7.6e-29 131.3 182 44.5
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-28 130.6 185 45.4
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.7e-28 130.2 124 57.3
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.7e-28 130.2 193 45.1
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 2.2e-28 129.8 124 55.6
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 6.5e-28 128.3 193 55.4
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 8.4e-28 127.9 130 53.8
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.9e-27 126.7 182 45.6
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 3.2e-27 125.9 134 55.2
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 3.2e-27 125.9 183 44.8
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 4.2e-27 125.6 184 46.2
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 5.5e-27 125.2 130 53.8
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 7.2e-27 124.8 190 42.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.2e-26 124.0 129 51.9
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.2e-26 124.0 190 53.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.2e-26 124.0 185 45.4
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.6e-26 123.6 120 55.8
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.7e-26 122.9 123 56.1
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.5e-26 122.5 132 52.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 4.6e-26 122.1 126 50.0
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 4.6e-26 122.1 129 55.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 7.9e-26 121.3 189 43.9
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.0e-25 120.9 192 44.3
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.0e-25 120.9 127 51.2
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.3e-25 120.6 127 52.8
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 1.3e-25 120.6 130 51.5
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 2.3e-25 119.8 187 53.5
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 3.9e-25 119.0 127 49.6
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 5.1e-25 118.6 197 51.8
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 5.1e-25 118.6 195 51.8
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 8.7e-25 117.9 192 43.2
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 8.7e-25 117.9 194 42.8
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.7e-25 117.9 183 42.6
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 8.7e-25 117.9 185 41.1
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.5e-24 117.1 183 42.6
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.5e-24 117.1 123 52.8
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.5e-24 117.1 133 51.9
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.9e-24 116.7 183 42.1
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.9e-24 116.7 130 50.8
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.9e-24 116.7 185 41.1
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.5e-24 116.3 130 50.8
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 3.3e-24 115.9 183 42.1
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 4.3e-24 115.5 187 46.5
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.3e-24 115.5 185 43.2
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 4.3e-24 115.5 126 52.4
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.7e-24 115.2 185 43.2
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.7e-24 115.2 193 40.9
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 7.4e-24 114.8 127 49.6
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-23 114.0 127 51.2
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.6e-23 113.6 194 41.2
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.6e-23 113.6 130 50.0
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-23 113.6 130 50.0
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.8e-23 112.8 183 42.6
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.8e-23 112.8 137 48.2
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-23 112.5 180 39.4
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-23 112.5 180 39.4
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 4.8e-23 112.1 133 51.9
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 6.3e-23 111.7 117 53.0
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 8.2e-23 111.3 128 50.0
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.1e-22 110.9 130 48.5
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.8e-22 110.2 177 39.5
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.8e-22 110.2 177 39.5
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.8e-22 110.2 127 52.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 4.1e-22 109.0 127 50.4
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 5.3e-22 108.6 126 46.0
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-21 107.1 179 39.7
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.0e-20 104.4 127 45.7
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 3.8e-20 102.4 191 40.3
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 5.0e-20 102.1 191 40.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 5.0e-20 102.1 127 45.7
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.9e-19 100.1 190 37.9
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.9e-19 100.1 120 49.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.2e-19 99.4 121 48.8
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 7.2e-19 98.2 121 41.3
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 9.4e-19 97.8 184 39.1
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.4e-19 97.8 119 48.7
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.2e-18 97.4 116 46.6
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.2e-18 97.4 128 47.7
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.2e-18 97.4 122 43.4
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.2e-18 97.4 129 46.5
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.1e-18 96.7 126 45.2
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.1e-18 96.7 184 38.6
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 2.7e-18 96.3 199 38.2
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 2.7e-18 96.3 122 47.5
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.6e-18 95.9 116 46.6
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 4.6e-18 95.5 133 48.9
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 6.1e-18 95.1 124 45.2
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 7.9e-18 94.7 128 46.1
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 7.9e-18 94.7 121 43.0
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.4e-17 94.0 116 45.7
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-17 94.0 129 45.7
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-17 94.0 129 46.5
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 2.3e-17 93.2 199 37.7
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.3e-17 93.2 117 45.3
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.3e-17 93.2 128 46.1
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 3.0e-17 92.8 124 42.7
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 5.1e-17 92.0 191 38.7
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 5.1e-17 92.0 180 35.0
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 5.1e-17 92.0 123 41.5
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 8.8e-17 91.3 108 51.9
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 8.8e-17 91.3 108 51.9
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-16 90.9 108 51.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-16 90.9 108 51.9
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.5e-16 90.5 183 36.6
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-16 90.1 108 52.8
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 2.0e-16 90.1 118 46.6
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 4.3e-16 89.0 123 44.7
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 7.4e-16 88.2 184 39.7
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-15 87.4 105 44.8
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.3e-15 87.4 121 45.5
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-15 87.0 114 45.6
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 3.7e-15 85.9 191 37.7
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 3.7e-15 85.9 199 36.7
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 3.7e-15 85.9 199 36.7
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 3.7e-15 85.9 200 36.0
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 4.8e-15 85.5 108 51.9
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 6.3e-15 85.1 108 51.9
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.4e-14 84.0 127 43.3
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-14 84.0 114 48.2
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-14 84.0 101 52.5
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-14 83.6 125 44.8
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-14 83.6 108 51.9
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.1e-14 82.8 130 39.2
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 5.3e-14 82.0 139 41.7
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-13 80.9 108 50.9
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-13 80.9 108 50.9
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 3.4e-13 79.3 108 49.1
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 4.5e-13 79.0 121 38.8
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 4.5e-13 79.0 126 38.1
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-12 77.0 94 52.1
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-12 76.6 114 39.5
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.9e-12 76.3 96 49.0
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 2.9e-12 76.3 96 49.0
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.0e-12 75.5 119 41.2
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 8.5e-12 74.7 125 46.4
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 1.9e-11 73.6 127 38.6
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-11 73.2 130 43.1
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-11 73.2 130 43.1
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.5e-11 73.2 116 41.4
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.2e-11 72.8 162 36.4
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 3.2e-11 72.8 117 41.0
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-11 72.8 115 37.4
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.2e-11 72.8 135 38.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 9.4e-11 71.2 115 39.1
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 9.4e-11 71.2 120 42.5
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.2e-10 70.9 119 39.5
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 6.1e-10 68.6 104 44.2
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-09 67.4 93 40.9
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-09 67.0 121 39.7
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.8e-09 67.0 113 38.9
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 6.7e-09 65.1 112 42.9
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-08 64.3 119 35.3
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.0e-08 63.5 144 33.3
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.3e-08 62.8 126 39.7
BcaB04g18929 Brassica carinata HOM05D021100 ORTHO05D021772 5.7e-08 62.0 159 36.5
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 7.4e-08 61.6 86 45.3
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.3e-07 60.8 128 35.9
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 4.8e-07 58.9 127 39.4
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.1e-06 56.2 61 50.8
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 4.1e-06 55.8 121 34.7
BcaC03g14931 Brassica carinata HOM05D008071 ORTHO05D009954 5.3e-06 55.5 126 34.9
BolC2t08535H Brassica oleracea HOM05D008071 ORTHO05D009954 5.3e-06 55.5 126 34.9
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.3e-06 55.5 125 32.8
A02p14820 Brassica napus HOM05D008071 ORTHO05D009954 9.1e-06 54.7 126 34.1
C02p24260 Brassica napus HOM05D008071 ORTHO05D009954 9.1e-06 54.7 126 34.1
BraA02t06549Z Brassica rapa HOM05D008071 ORTHO05D009954 9.1e-06 54.7 126 34.1
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 9.1e-06 54.7 99 37.4


User provided reference genes

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