Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1569 Capsella rubella HOM05D008216 ORTHO05D012788 2.1e-298 1028.9 779 100.0
AL3G28590 Arabidopsis lyrata HOM05D008216 ORTHO05D012788 3.4e-192 676.0 781 76.6
Sp3g14290 Schrenkiella parvula HOM05D008216 ORTHO05D012788 5.3e-185 652.1 784 73.6
AT3G15950 Arabidopsis thaliana HOM05D008216 ORTHO05D012788 6.5e-183 645.2 782 71.1
BcaB04g20891 Brassica carinata HOM05D008216 ORTHO05D012788 2.6e-168 596.7 782 69.3
BcaC05g28920 Brassica carinata HOM05D008216 ORTHO05D012788 1.9e-166 590.5 782 70.5
C05p50470 Brassica napus HOM05D008216 ORTHO05D012788 3.0e-164 583.2 787 69.9
BcaC09g48575 Brassica carinata HOM05D008216 ORTHO05D012788 5.1e-164 582.4 784 68.8
A05p33490 Brassica napus HOM05D008216 ORTHO05D012788 5.7e-163 578.9 791 69.7
C01p48410 Brassica napus HOM05D008216 ORTHO05D012788 7.4e-163 578.6 792 69.9
BraA05t22171Z Brassica rapa HOM05D008216 ORTHO05D012788 9.7e-163 578.2 797 68.6
BolC5t33794H Brassica oleracea HOM05D008216 ORTHO05D012788 1.4e-161 574.3 785 69.4
A01p38160 Brassica napus HOM05D008216 ORTHO05D012788 1.2e-160 571.2 796 69.1
BraA01t03874Z Brassica rapa HOM05D008216 ORTHO05D012788 2.6e-160 570.1 798 68.4
BolC1t04801H Brassica oleracea HOM05D008216 ORTHO05D012788 1.7e-159 567.4 809 65.9
Thhalv10020122m.g Eutrema salsugineum HOM05D008216 ORTHO05D012788 5.3e-153 545.8 800 67.1
BcaB06g25696 Brassica carinata HOM05D008216 ORTHO05D012788 2.8e-146 523.5 781 66.7
CARHR091090 Cardamine hirsuta HOM05D008216 ORTHO05D012788 4.8e-138 496.1 782 53.1
C01p48420 Brassica napus HOM05D008216 ORTHO05D012788 1.0e-119 435.3 414 71.5
BcaC09g48573 Brassica carinata HOM05D008216 ORTHO05D012788 2.0e-112 411.0 343 74.3
BolC6t35876H Brassica oleracea HOM05D008216 ORTHO05D011188 8.1e-85 319.3 816 48.5
CARHR042550 Cardamine hirsuta HOM05D008216 ORTHO05D011188 3.8e-82 310.5 783 52.4
Thhalv10011252m.g Eutrema salsugineum HOM05D008216 ORTHO05D011188 4.9e-82 310.1 793 52.1
Sp1g39030 Schrenkiella parvula HOM05D008216 ORTHO05D011188 1.4e-81 308.5 797 53.1
C06p13990 Brassica napus HOM05D008216 ORTHO05D011188 2.6e-75 287.7 790 50.5
BolC6t36576H Brassica oleracea HOM05D008216 ORTHO05D011188 2.6e-75 287.7 790 50.5
BcaC08g43993 Brassica carinata HOM05D008216 ORTHO05D011188 4.5e-75 287.0 798 48.4
AL1G60670 Arabidopsis lyrata HOM05D008216 ORTHO05D011188 4.9e-74 283.5 790 54.2
AT1G52410 Arabidopsis thaliana HOM05D008216 ORTHO05D011188 4.2e-73 280.4 789 51.8
BcaB02g10995 Brassica carinata HOM05D008216 ORTHO05D011188 7.1e-73 279.6 816 38.7
A06p01810 Brassica napus HOM05D008216 ORTHO05D011188 3.9e-71 273.9 784 47.8
Carub.0001s4140 Capsella rubella HOM05D008216 ORTHO05D011188 3.9e-71 273.9 827 46.2
BraA06t23398Z Brassica rapa HOM05D008216 ORTHO05D011188 5.1e-71 273.5 783 45.1
BraA05t20799Z Brassica rapa HOM05D008216 ORTHO05D011188 9.6e-70 269.2 789 48.2
BcaC08g43426 Brassica carinata HOM05D008216 ORTHO05D011188 1.6e-69 268.5 786 52.0
A05p19020 Brassica napus HOM05D008216 ORTHO05D011188 2.0e-67 261.5 797 46.4
C06p07930 Brassica napus HOM05D008216 ORTHO05D011188 1.0e-66 259.2 809 50.8
Aa31LG10G2510 Aethionema arabicum HOM05D008216 ORTHO05D011188 5.3e-60 236.9 267 57.7
AT3G15960 Arabidopsis thaliana HOM05D008216 ORTHO05D011188 9.0e-60 236.1 270 51.9
BcaC01g03848 Brassica carinata HOM05D008216 ORTHO05D011188 1.2e-51 209.1 292 45.5
BolC3t17077H Brassica oleracea HOM05D008216 ORTHO05D011188 1.2e-51 209.1 292 45.5
THA.LOC104818006 Tarenaya hassleriana HOM05D008216 ORTHO05D011188 2.0e-51 208.4 292 46.9
C03p47970 Brassica napus HOM05D008216 ORTHO05D011188 4.5e-51 207.2 270 47.0
Thhalv10022078m.g Eutrema salsugineum HOM05D008216 ORTHO05D011188 1.1e-44 186.0 276 43.1
BcaB04g18868 Brassica carinata HOM05D008216 ORTHO05D011188 9.1e-44 183.0 185 53.5
BcaB04g20890 Brassica carinata HOM05D008216 ORTHO05D011188 1.7e-42 178.7 294 40.1
A01p38150 Brassica napus HOM05D008216 ORTHO05D011188 1.7e-42 178.7 294 40.1
C01p48400 Brassica napus HOM05D008216 ORTHO05D011188 8.5e-42 176.4 276 40.9
BraA01t03873Z Brassica rapa HOM05D008216 ORTHO05D011188 8.5e-42 176.4 276 40.9
BolC1t04800H Brassica oleracea HOM05D008216 ORTHO05D011188 1.4e-41 175.6 272 41.2
BcaC09g48576 Brassica carinata HOM05D008216 ORTHO05D011188 1.6e-40 172.2 272 40.8
Sp3g14300 Schrenkiella parvula HOM05D008216 ORTHO05D011188 2.4e-36 158.3 272 37.9
Sp3g14310 Schrenkiella parvula HOM05D008216 ORTHO05D011188 2.2e-29 135.2 262 38.2
SpUN0970_0010 Schrenkiella parvula HOM05D008216 ORTHO05D011188 1.8e-28 132.1 249 38.6
CARHR090970 Cardamine hirsuta HOM05D008216 ORTHO05D011188 2.9e-26 124.8 186 41.4
AL3G28600 Arabidopsis lyrata HOM05D008216 ORTHO05D011188 1.3e-21 109.4 106 54.7
Aa31LG10G2520 Aethionema arabicum HOM05D008216 ORTHO05D058766 3.8e-18 97.8 145 46.2
BcaB08g35170 Brassica carinata HOM05D008216 ORTHO05D027409 9.8e-06 56.6 62 56.5


User provided reference genes

Program Settings