Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1558 Capsella rubella HOM05D006424 ORTHO05D007945 6.1e-157 557.4 269 100.0
AT3G15840 Arabidopsis thaliana HOM05D006424 ORTHO05D007945 1.0e-148 530.0 269 94.1
AL3G28500 Arabidopsis lyrata HOM05D006424 ORTHO05D007945 3.0e-148 528.5 269 94.4
BcaC05g28929 Brassica carinata HOM05D006424 ORTHO05D007945 9.8e-147 523.5 269 92.9
C05p50560 Brassica napus HOM05D006424 ORTHO05D007945 9.8e-147 523.5 269 92.9
A05p33570 Brassica napus HOM05D006424 ORTHO05D007945 3.7e-146 521.5 269 92.9
BolC5t33801H Brassica oleracea HOM05D006424 ORTHO05D007945 8.3e-146 520.4 269 92.6
CARHR090930 Cardamine hirsuta HOM05D006424 ORTHO05D007945 1.1e-145 520.0 270 93.0
BcaB06g25691 Brassica carinata HOM05D006424 ORTHO05D007945 3.1e-145 518.5 269 92.6
A03p39490 Brassica napus HOM05D006424 ORTHO05D007945 3.8e-143 511.5 270 91.5
Thhalv10022443m.g Eutrema salsugineum HOM05D006424 ORTHO05D007945 5.0e-143 511.1 269 91.8
BraA05t22180Z Brassica rapa HOM05D006424 ORTHO05D007945 8.6e-143 510.4 269 91.4
C03p47890 Brassica napus HOM05D006424 ORTHO05D007945 3.3e-142 508.4 270 91.1
Sp3g14150 Schrenkiella parvula HOM05D006424 ORTHO05D007945 9.5e-142 506.9 268 89.9
BraA03t13099Z Brassica rapa HOM05D006424 ORTHO05D007945 4.7e-141 504.6 270 90.7
Aa31LG8G3030 Aethionema arabicum HOM05D006424 ORTHO05D007945 3.4e-139 498.4 269 87.7
BcaC01g03854 Brassica carinata HOM05D006424 ORTHO05D007945 4.9e-138 494.6 270 88.9
BolC3t17067H Brassica oleracea HOM05D006424 ORTHO05D007945 1.9e-134 482.6 289 82.4
THA.LOC104810510 Tarenaya hassleriana HOM05D006424 ORTHO05D007945 1.9e-118 429.5 275 75.3
COL.COLO4_11949 Corchorus olitorius HOM05D006424 ORTHO05D007945 3.6e-109 398.7 273 70.3
Eucgr.F03876 Eucalyptus grandis HOM05D006424 ORTHO05D007945 5.2e-108 394.8 266 70.3
Thecc.06G024200 Theobroma cacao HOM05D006424 ORTHO05D007945 2.2e-106 389.4 273 68.9
Duzib192G0907 Durio zibethinus HOM05D006424 ORTHO05D007945 8.4e-106 387.5 271 69.0
Nn2g12084 Nelumbo nucifera HOM05D006424 ORTHO05D007945 2.4e-105 386.0 269 68.4
Cpa.g.sc10.267 Carica papaya HOM05D006424 ORTHO05D007945 9.3e-105 384.0 257 70.8
Gorai.010G225400 Gossypium raimondii HOM05D006424 ORTHO05D007945 1.6e-104 383.3 243 73.3
Gohir.A06G185600 Gossypium hirsutum HOM05D006424 ORTHO05D007945 3.5e-104 382.1 275 67.3
Gohir.D06G192200 Gossypium hirsutum HOM05D006424 ORTHO05D007945 3.5e-104 382.1 274 67.5
Nn8g39504 Nelumbo nucifera HOM05D006424 ORTHO05D007945 6.0e-104 381.3 282 66.0
MELO3C023426.2 Cucumis melo HOM05D006424 ORTHO05D007945 1.7e-103 379.8 255 70.6
GSVIVG01017340001 Vitis vinifera HOM05D006424 ORTHO05D007945 1.7e-103 379.8 283 65.7
ClCG09G002940 Citrullus lanatus HOM05D006424 ORTHO05D007945 3.0e-103 379.0 222 76.6
Sed0012965 Sechium edule HOM05D006424 ORTHO05D007945 3.0e-103 379.0 222 76.1
QL05p029818 Quercus lobata HOM05D006424 ORTHO05D007945 3.9e-103 378.6 240 70.8
Manes.11G056800 Manihot esculenta HOM05D006424 ORTHO05D007945 1.1e-102 377.1 260 68.8
CsaV3_7G032330 Cucumis sativus L. HOM05D006424 ORTHO05D007945 1.5e-102 376.7 222 75.7
TWI12G0141 Tripterygium wilfordii HOM05D006424 ORTHO05D007945 1.5e-102 376.7 286 64.7
PGR102G1391 Punica granatum HOM05D006424 ORTHO05D007945 1.9e-102 376.3 266 66.2
PGSC0003DMG402028626 Solanum tuberosum HOM05D006424 ORTHO05D007945 3.3e-102 375.6 281 65.1
Actinidia08796 Actinidia chinensis HOM05D006424 ORTHO05D007945 5.6e-102 374.8 286 62.2
Lalb_Chr04g0262371 Lupinus albus HOM05D006424 ORTHO05D007945 7.3e-102 374.4 272 66.5
AUR62011520 Chenopodium quinoa HOM05D006424 ORTHO05D007945 9.6e-102 374.0 242 70.7
Lj9A500T81 Lonicera japonica HOM05D006424 ORTHO05D007945 9.6e-102 374.0 244 68.9
Nitab4.5_0009497g0010 Nicotiana tabacum HOM05D006424 ORTHO05D007945 1.6e-101 373.2 283 62.5
Manes.04G112700 Manihot esculenta HOM05D006424 ORTHO05D007945 2.1e-101 372.9 263 65.4
Oeu039429.1 Olea europaea HOM05D006424 ORTHO05D007945 2.1e-101 372.9 237 72.6
Solyc12g042770.3 Solanum lycopersicum HOM05D006424 ORTHO05D007945 2.8e-101 372.5 281 64.4
Cc04_g04390 Coffea canephora HOM05D006424 ORTHO05D007945 3.6e-101 372.1 266 65.8
Phvul.010G156300 Phaseolus vulgaris HOM05D006424 ORTHO05D007945 3.6e-101 372.1 278 64.0
Sabra01G0157400 Salix brachista HOM05D006424 ORTHO05D007945 3.6e-101 372.1 209 77.5
VMungo0331G1912 Vigna mungo HOM05D006424 ORTHO05D007945 3.6e-101 372.1 278 64.4
MD17G1212100 Malus domestica HOM05D006424 ORTHO05D007945 4.8e-101 371.7 280 64.6
Potri.001G204300 Populus trichocarpa HOM05D006424 ORTHO05D007945 6.2e-101 371.3 261 65.9
Sopen12g021950 Solanum pennellii HOM05D006424 ORTHO05D007945 6.2e-101 371.3 281 64.4
Prupe.3G087300 Prunus persica HOM05D006424 ORTHO05D007945 1.1e-100 370.5 267 67.4
CSS0015595 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 1.8e-100 369.8 270 63.0
Rhsim12G0191200 Rhododendron simsii HOM05D006424 ORTHO05D007945 1.8e-100 369.8 284 60.9
Lj3g0018478 Lotus japonicus HOM05D006424 ORTHO05D007945 2.4e-100 369.4 221 74.7
RcHm_v2.0_Chr2g0135411 Rosa chinensis HOM05D006424 ORTHO05D007945 2.4e-100 369.4 216 77.8
Medtr4g010140 Medicago truncatula HOM05D006424 ORTHO05D007945 3.1e-100 369.0 280 63.9
FAN02G1519 Fragaria x ananassa HOM05D006424 ORTHO05D007945 5.3e-100 368.2 216 76.9
Atru.chr1.2950 Acer truncatum HOM05D006424 ORTHO05D007945 6.9e-100 367.9 272 65.4
AUR62016338 Chenopodium quinoa HOM05D006424 ORTHO05D007945 6.9e-100 367.9 283 64.3
Peaxi162Scf00034g01413 Petunia axillaris HOM05D006424 ORTHO05D007945 6.9e-100 367.9 222 76.1
FAN05G3690 Fragaria x ananassa HOM05D006424 ORTHO05D007945 9.0e-100 367.5 216 75.5
TAR383G1051 Trochodendron aralioides HOM05D006424 ORTHO05D007945 9.0e-100 367.5 284 65.1
Actinidia15982 Actinidia chinensis HOM05D006424 ORTHO05D007945 1.2e-99 367.1 283 61.1
MSTRG.22746 Avicennia marina HOM05D006424 ORTHO05D007945 1.5e-99 366.7 265 67.2
CANSAT56G3050 Cannabis sativa HOM05D006424 ORTHO05D007945 1.5e-99 366.7 220 75.5
FAN14G0356 Fragaria x ananassa HOM05D006424 ORTHO05D007945 1.5e-99 366.7 216 76.4
Hma1.2p1_0042F.1_g025600 Hydrangea macrophylla HOM05D006424 ORTHO05D007945 2.0e-99 366.3 281 62.3
CSS0035863 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 4.5e-99 365.2 277 63.5
MBI04_g29330_MAGBIO Magnolia biondii HOM05D006424 ORTHO05D007945 4.5e-99 365.2 227 70.5
Cfa001961 Carpinus fangiana HOM05D006424 ORTHO05D007945 5.8e-99 364.8 241 70.5
HanXRQChr04g0097881 Helianthus annuus HOM05D006424 ORTHO05D007945 5.8e-99 364.8 233 71.2
Ca_20445_v3 Cicer arietinum L. HOM05D006424 ORTHO05D007945 9.9e-99 364.0 284 62.7
DCAR_021344 Daucus carota HOM05D006424 ORTHO05D007945 3.8e-98 362.1 213 75.1
Ciclev10026222m.g Citrus clementina HOM05D006424 ORTHO05D007945 4.9e-98 361.7 284 60.6
Glyma.08G213000 Glycine max HOM05D006424 ORTHO05D007945 8.4e-98 360.9 278 63.3
CiPaw.02G157300 Carya illinoinensis HOM05D006424 ORTHO05D007945 1.1e-97 360.5 275 62.9
Migut.I00764 Erythranthe guttata HOM05D006424 ORTHO05D007945 9.3e-97 357.5 279 63.8
Haze_16559 Corylus avellana HOM05D006424 ORTHO05D007945 1.6e-96 356.7 265 65.3
PSO210G3245 Papaver somniferum HOM05D006424 ORTHO05D007945 2.1e-96 356.3 278 60.8
Glyma.07G029900 Glycine max HOM05D006424 ORTHO05D007945 3.5e-96 355.5 271 63.1
PSO210G5365 Papaver somniferum HOM05D006424 ORTHO05D007945 7.9e-96 354.4 278 60.1
TPR.G38617 Trifolium pratense HOM05D001630 ORTHO05D007945 7.9e-96 354.4 274 62.4
CiPaw.01G248200 Carya illinoinensis HOM05D006424 ORTHO05D007945 1.3e-95 353.6 236 69.1
ATR0322G065 Amborella trichopoda HOM05D006424 ORTHO05D007945 2.3e-95 352.8 221 70.1
CAN.G47.13 Capsicum annuum HOM05D006424 ORTHO05D007945 2.3e-95 352.8 208 75.0
unitig_27.g24949 Utricularia gibba HOM05D006424 ORTHO05D007945 1.1e-94 350.5 271 62.4
arahy.Tifrunner.gnm1.ann1.92ZGJC Arachis hypogaea HOM05D006424 ORTHO05D007945 5.6e-94 348.2 239 68.2
vmacro16897 Vaccinium macrocarpon HOM05D006424 ORTHO05D007945 1.6e-93 346.7 212 70.3
ECA247G2617 Erigeron canadensis HOM05D006424 ORTHO05D007945 1.8e-92 343.2 269 61.7
Aqoxy7G03662 Aquilegia oxysepala HOM05D006424 ORTHO05D007945 9.0e-92 340.9 279 58.1
FvH4_6g29710 Fragaria vesca HOM05D006424 ORTHO05D007945 1.5e-91 340.1 195 76.4
Ah.01g020600 Amaranthus hybridus HOM05D006424 ORTHO05D007945 2.0e-91 339.7 208 72.6
Nitab4.5_0003157g0020 Nicotiana tabacum HOM05D006424 ORTHO05D007945 5.8e-91 338.2 283 58.3
Lsat_1_v5_gn_1_34401 Lactuca sativa HOM05D006424 ORTHO05D007945 7.6e-91 337.8 311 55.0
CDE07G1654 Ceratophyllum demersum HOM05D006424 ORTHO05D007945 1.2e-88 330.5 280 60.0
FAN09G3401 Fragaria x ananassa HOM05D006424 ORTHO05D007945 2.1e-88 329.7 234 66.7
Os03g0586500 Oryza sativa ssp. japonica HOM05D006424 ORTHO05D007945 1.1e-84 317.4 212 67.5
Zm00001eb049190 Zea mays HOM05D006424 ORTHO05D007945 1.9e-81 306.6 210 66.2
Zm00001eb219530 Zea mays HOM05D006424 ORTHO05D007945 1.8e-79 300.1 231 61.5
SalBow2G1302 Salvia bowleyana HOM05D006424 ORTHO05D007945 1.4e-76 290.4 283 57.6
Mapoly0024s0088 Marchantia polymorpha HOM05D006424 ORTHO05D007945 1.1e-73 280.8 266 50.0
Thecc.06G024600 Theobroma cacao HOM05D006424 ORTHO05D007945 5.1e-71 271.9 206 65.5
Pp3c9_11540 Physcomitrium patens HOM05D006424 ORTHO05D007945 8.7e-71 271.2 247 50.2
Pp3c22_2660 Physcomitrium patens HOM05D006424 ORTHO05D007945 3.7e-69 265.8 219 53.4
Dinv38123 Davidia involucrata HOM05D006424 ORTHO05D007945 8.2e-69 264.6 210 64.3
CBR_g38381 Chara braunii HOM05D006424 ORTHO05D007945 4.1e-68 262.3 202 55.9
Sed0007474 Sechium edule HOM05D006424 ORTHO05D007945 5.3e-68 261.9 168 70.2
AagrBONN_evm.TU.Sc2ySwM_344.5484 Anthoceros agrestis HOM05D006424 ORTHO05D007945 5.9e-67 258.5 268 47.4
SMO331G0083 Selaginella moellendorffii HOM05D006424 ORTHO05D007945 1.6e-64 250.4 204 54.4
Thecc.K0004600 Theobroma cacao HOM05D006424 ORTHO05D007945 2.7e-64 249.6 147 76.2
Hund06560 Selenicereus undatus HOM05D006424 ORTHO05D007945 1.6e-56 223.8 181 59.1
Pp3c15_11500 Physcomitrium patens HOM05D006424 ORTHO05D007945 2.1e-56 223.4 182 55.5
SEGI_16074 Sequoiadendron giganteum HOM05D006424 ORTHO05D007945 9.7e-54 214.5 169 58.0
arahy.Tifrunner.gnm1.ann1.7R86JN Arachis hypogaea HOM05D006424 ORTHO05D007945 1.0e-50 204.5 243 46.9
EL10Ac9g21901 Beta vulgaris HOM05D006424 ORTHO05D007945 5.3e-44 182.2 163 57.7
Psat7g257120 Pisum sativum HOM05D006424 ORTHO05D007945 7.0e-44 181.8 171 53.8
QL05p029868 Quercus lobata HOM05D006424 ORTHO05D007945 8.8e-31 138.3 135 53.3
QL05p029832 Quercus lobata HOM05D006424 ORTHO05D007945 4.4e-22 109.4 69 66.7
Oeu000425.1 Olea europaea HOM05D006424 ORTHO05D007945 5.7e-22 109.0 136 42.6
arahy.Tifrunner.gnm1.ann1.ZYH6JG Arachis hypogaea HOM05D006424 ORTHO05D007945 3.1e-15 86.7 55 70.9
arahy.Tifrunner.gnm1.ann1.YP381G Arachis hypogaea HOM05D006424 ORTHO05D007945 1.2e-11 74.7 37 83.8


User provided reference genes

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