Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 4.3e-164 581.3 291 100.0
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 9.6e-148 526.9 296 89.9
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 9.9e-145 516.9 297 88.6
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.2e-119 432.2 293 74.1
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 7.1e-119 431.0 292 74.3
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 9.3e-119 430.6 292 74.7
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 6.0e-118 427.9 301 73.4
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.4e-116 421.0 301 72.4
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 4.1e-114 415.2 284 74.6
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.1e-114 415.2 282 76.6
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 5.9e-113 411.4 284 73.9
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.2e-112 409.5 284 73.6
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-112 409.5 284 73.6
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 4.2e-111 405.2 283 73.1
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 5.5e-111 404.8 288 71.9
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 5.5e-111 404.8 288 71.9
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-110 402.9 287 72.5
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-110 402.9 283 72.8
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-110 402.9 287 72.5
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 6.1e-110 401.4 287 72.1
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 7.4e-108 394.4 277 73.3
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.7e-107 393.3 267 73.8
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 9.4e-103 377.5 281 69.8
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.6e-102 376.7 280 69.6
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.6e-102 376.7 280 69.6
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.6e-102 376.7 289 68.9
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 7.9e-102 374.4 286 68.5
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.4e-101 373.6 289 68.2
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 6.7e-101 371.3 289 67.8
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 2.1e-94 349.7 215 77.2
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.4e-93 347.1 215 76.3
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.8e-93 346.7 234 71.8
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 2.3e-93 346.3 215 76.3
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.3e-93 346.3 215 76.3
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.9e-93 345.5 266 63.9
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 4.4e-92 342.0 279 63.8
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 5.7e-92 341.7 216 74.1
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 9.7e-92 340.9 231 71.4
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.3e-91 340.5 271 63.8
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.7e-91 340.1 233 71.7
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 2.2e-91 339.7 214 75.2
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.7e-91 339.0 225 71.6
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 4.8e-91 338.6 272 64.0
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 6.3e-91 338.2 219 74.9
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 6.3e-91 338.2 231 71.0
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 8.2e-91 337.8 225 72.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.8e-90 336.7 222 72.5
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.8e-90 336.7 265 67.2
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.4e-90 336.3 276 61.2
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.1e-90 335.9 220 73.2
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 3.1e-90 335.9 218 72.0
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 4.1e-90 335.5 226 72.6
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.2e-89 334.0 261 64.4
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.6e-89 333.6 239 68.6
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.6e-89 333.6 220 75.5
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.6e-89 333.6 249 67.1
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.6e-89 333.6 233 70.4
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.9e-89 331.6 270 64.4
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 5.9e-89 331.6 215 73.5
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.0e-88 330.9 213 75.1
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.0e-88 330.9 249 65.5
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.2e-88 329.7 265 63.4
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 3.8e-88 328.9 256 64.1
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.8e-88 328.9 270 63.7
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 6.5e-88 328.2 263 64.3
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 6.5e-88 328.2 266 63.9
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 6.5e-88 328.2 258 63.6
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 8.5e-88 327.8 218 70.6
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.5e-87 327.0 233 67.8
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.9e-87 326.6 233 68.2
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.9e-87 326.6 270 63.3
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.9e-87 326.6 224 70.1
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.9e-87 326.6 219 70.8
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.5e-87 326.2 214 72.4
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 3.2e-87 325.9 256 66.0
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 9.4e-87 324.3 217 71.4
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.6e-86 323.6 228 68.9
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.7e-86 322.8 221 72.4
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.7e-86 322.8 221 72.4
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 6.1e-86 321.6 236 66.9
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 6.1e-86 321.6 236 66.9
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 1.0e-85 320.9 236 66.9
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.0e-85 320.9 228 68.9
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-85 320.5 236 66.9
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.4e-85 320.5 236 66.9
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.4e-85 320.5 236 66.9
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.8e-85 320.1 239 67.8
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 6.7e-85 318.2 280 58.6
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 6.7e-85 318.2 260 60.4
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 4.4e-84 315.5 213 70.4
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 5.7e-84 315.1 216 69.9
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 9.7e-84 314.3 236 64.8
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.3e-83 313.9 241 64.7
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.8e-83 312.8 261 60.5
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 4.8e-83 312.0 226 69.9
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.4e-82 310.5 241 63.5
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 4.1e-82 308.9 274 55.8
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.3e-82 308.5 244 62.7
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 7.0e-82 308.1 214 68.2
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 7.0e-82 308.1 258 60.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.2e-81 307.4 260 62.3
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.2e-81 307.4 226 65.9
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.6e-81 307.0 230 66.5
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.0e-81 306.6 252 63.5
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 2.7e-81 306.2 208 73.1
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 5.0e-80 302.0 231 65.4
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.1e-79 300.8 222 67.1
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-79 300.8 224 68.3
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.1e-79 300.8 238 63.4
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.5e-79 300.4 265 56.6
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.5e-79 300.4 224 66.1
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.5e-79 300.4 208 70.2
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.5e-79 299.7 211 68.7
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 4.2e-79 298.9 213 67.1
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.2e-79 298.9 271 55.4
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 5.5e-79 298.5 214 70.6
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 5.5e-79 298.5 224 67.9
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 9.4e-79 297.7 269 58.4
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 9.4e-79 297.7 213 69.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 9.4e-79 297.7 246 61.4
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 9.4e-79 297.7 223 65.0
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.2e-78 297.4 212 68.9
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.2e-78 297.4 246 61.4
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.7e-78 296.2 215 68.8
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.7e-78 296.2 224 67.4
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.0e-77 294.3 215 65.6
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 3.0e-77 292.7 254 59.4
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 8.8e-77 291.2 210 66.2
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 8.8e-77 291.2 261 59.8
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.4e-76 289.3 213 67.1
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.2e-75 286.6 213 65.3
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.8e-74 283.5 180 75.6
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.4e-74 283.1 225 63.6
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 2.7e-73 279.6 206 67.0
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.3e-72 277.3 219 63.9
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 3.8e-72 275.8 264 56.8
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 6.6e-72 275.0 212 65.1
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 1.5e-71 273.9 201 67.7
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.6e-70 269.2 236 60.2
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 8.9e-69 264.6 226 60.6
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.6e-68 263.1 177 71.8
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.4e-68 262.7 173 74.6
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 2.6e-60 236.5 224 58.0
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.6e-60 236.5 225 59.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 9.8e-60 234.6 277 48.7
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.7e-59 232.6 268 48.9
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.7e-59 232.6 251 49.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 4.6e-57 225.7 198 56.1
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.8e-54 216.5 214 52.3
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 2.8e-54 216.5 134 75.4
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 4.7e-54 215.7 133 77.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 8.0e-54 214.9 134 74.6
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 6.2e-46 188.7 214 48.6
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 8.9e-45 184.9 212 43.9
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.4e-37 160.2 163 50.9
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.9e-34 150.6 111 64.0
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 3.2e-34 149.8 177 49.2
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.3e-27 127.9 78 80.8
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 3.3e-23 113.2 79 63.3
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.1e-14 84.0 65 55.4
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 3.8e-11 73.2 89 43.8
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.5e-10 70.5 81 51.9
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.3e-08 64.7 44 70.5
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.3e-08 63.9 97 38.1
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.1e-06 57.4 65 46.2
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.1e-06 57.4 40 65.0


User provided reference genes

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