Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 0.0e+00 1321.6 709 100.0
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 0.0e+00 1167.5 731 87.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 0.0e+00 1167.1 730 87.9
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 0.0e+00 1145.2 717 84.9
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 0.0e+00 1095.1 711 83.5
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 0.0e+00 1085.5 719 82.8
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 0.0e+00 1080.5 711 84.8
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 4.8e-310 1067.4 711 84.0
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.0e-304 1049.7 713 80.8
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.3e-302 1042.7 714 80.4
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 3.7e-302 1041.2 716 78.1
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 2.6e-300 1035.0 717 81.6
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 1.8e-293 1012.3 711 80.7
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 8.5e-291 1003.4 711 79.7
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 5.5e-290 1000.7 711 79.9
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 2.7e-289 998.4 717 79.4
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 3.0e-288 995.0 714 79.8
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 3.7e-286 988.0 711 78.9
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 8.0e-273 943.7 721 73.4
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.3e-264 915.6 721 69.9
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.0e-223 779.6 747 58.5
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 1.3e-217 760.4 754 57.2
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.1e-216 755.7 732 56.8
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 3.8e-214 748.8 738 56.9
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 2.7e-212 742.7 741 56.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.7e-212 742.7 769 54.5
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 3.5e-212 742.3 730 57.4
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 4.6e-212 741.9 740 56.6
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 6.7e-211 738.0 769 54.2
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 6.7e-211 738.0 749 56.5
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 3.3e-210 735.7 739 57.2
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 9.0e-208 727.6 741 54.9
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-207 727.2 743 55.2
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.2e-207 727.2 742 55.5
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.5e-207 726.9 758 55.9
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 2.6e-207 726.1 736 56.4
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.3e-206 723.8 741 55.2
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-205 720.7 712 56.5
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.9e-205 719.9 793 53.1
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.2e-204 717.2 722 56.9
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 8.7e-203 711.1 754 54.9
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.1e-202 710.7 750 53.9
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 2.5e-202 709.5 711 56.3
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.3e-202 708.8 768 53.6
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 5.6e-202 708.4 733 54.4
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 1.3e-201 707.2 806 52.1
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.1e-201 706.4 773 53.3
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 2.1e-201 706.4 736 54.5
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 4.9e-198 695.3 726 55.0
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.1e-196 689.9 738 53.1
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 6.0e-196 688.3 740 53.1
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 6.7e-195 684.9 731 53.6
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.5e-194 683.7 745 53.2
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.3e-194 682.6 742 53.4
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 2.8e-193 679.5 771 50.7
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 8.2e-193 677.9 727 53.6
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 3.4e-191 672.5 725 53.0
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.1e-189 667.5 752 52.0
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 1.9e-189 666.8 772 51.9
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 9.4e-189 664.5 849 48.5
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 9.4e-189 664.5 821 50.3
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 2.1e-188 663.3 764 53.3
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.0e-187 661.0 756 51.1
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 5.1e-187 658.7 818 49.8
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.5e-186 657.1 801 50.8
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.5e-186 657.1 745 51.8
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.5e-186 656.4 849 48.2
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 5.7e-186 655.2 783 50.2
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.7e-185 653.7 838 49.8
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 3.7e-185 652.5 822 49.5
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 8.2e-185 651.4 746 50.3
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 2.4e-184 649.8 747 52.3
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 2.4e-184 649.8 822 49.5
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 5.3e-184 648.7 748 51.1
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 9.1e-184 647.9 825 47.5
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.5e-183 647.1 787 47.9
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 3.4e-183 646.0 803 48.7
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 8.5e-182 641.3 644 56.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 3.2e-181 639.4 801 48.3
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.2e-181 639.4 806 49.0
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.6e-180 637.1 819 47.6
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 6.1e-180 635.2 719 52.0
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.4e-179 634.0 766 50.0
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 5.1e-179 632.1 770 49.5
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 8.8e-179 631.3 693 53.0
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-178 630.9 725 50.6
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.3e-178 629.4 711 51.5
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 3.3e-178 629.4 733 50.6
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 2.2e-177 626.7 832 47.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.4e-176 624.0 738 50.1
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.8e-176 623.6 738 50.0
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.1e-176 622.5 750 50.1
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.7e-174 617.1 724 52.2
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 2.2e-174 616.7 727 49.8
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 8.5e-174 614.8 752 49.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 7.2e-173 611.7 601 55.1
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 7.2e-173 611.7 662 52.1
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 8.8e-171 604.7 696 52.0
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.8e-169 599.7 703 50.6
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 2.6e-167 593.2 692 49.9
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 5.9e-167 592.0 780 47.2
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.8e-163 580.5 705 50.9
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 5.2e-163 578.9 817 45.0
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.1e-160 571.2 749 47.5
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.7e-159 566.6 853 43.0
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 6.5e-158 562.0 810 44.3
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 8.5e-158 561.6 712 48.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.3e-150 537.7 705 46.5
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 5.0e-150 535.8 430 63.7
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 4.9e-145 519.2 630 48.3
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 7.8e-143 511.9 712 46.3
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.6e-140 504.2 618 49.5
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 7.5e-138 495.4 839 39.2
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 7.5e-138 495.4 838 39.7
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 2.9e-137 493.4 827 40.6
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.4e-136 490.3 426 59.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.0e-135 487.3 718 42.5
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 3.0e-126 456.8 752 39.1
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 8.3e-121 438.7 422 56.2
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 4.7e-116 422.9 750 38.4
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.8e-105 386.7 757 37.4
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 5.3e-99 366.3 470 45.1
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.5e-88 330.9 497 41.2
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.1e-84 317.8 483 40.6
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.1e-83 313.5 482 39.8
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.4e-82 310.5 701 36.5
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.2e-81 307.8 306 52.3
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.7e-77 292.4 702 32.6
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.2e-76 291.2 465 39.4
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.7e-76 290.4 438 39.5
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.1e-71 274.6 572 34.3
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.1e-71 274.6 572 34.3
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.7e-71 274.2 490 36.7
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.0e-69 268.1 575 35.1
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.1e-61 242.3 525 38.3
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 9.7e-61 239.2 582 35.4
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 8.2e-52 209.5 189 49.7
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.4e-51 208.0 386 40.2
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 2.2e-41 174.9 92 85.9
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 9.8e-37 159.5 194 47.4
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.4e-19 102.4 405 31.6
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 2.3e-17 95.1 72 62.5
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.8e-13 80.5 54 57.4
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.3e-12 79.3 79 44.3
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 8.3e-12 76.6 417 27.1
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 2.4e-11 75.1 53 62.3
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.9e-09 67.8 77 40.3
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 6.6e-09 67.0 50 62.0
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.5e-08 65.9 68 42.6
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 4.3e-08 64.3 53 50.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.3e-08 64.3 53 50.9
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 5.6e-08 63.9 73 45.2
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 1.1e-06 59.7 122 34.4


User provided reference genes

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