Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 2.0e-158 562.4 289 100.0
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 5.9e-158 560.8 289 99.7
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.7e-157 559.3 289 99.3
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.1e-156 556.6 289 98.6
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 2.5e-156 555.4 288 98.3
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.6e-155 552.7 288 97.9
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 2.8e-155 552.0 289 97.6
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 3.6e-155 551.6 288 97.9
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 4.7e-155 551.2 288 96.9
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 4.7e-155 551.2 289 97.2
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 4.7e-155 551.2 288 96.9
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 4.7e-155 551.2 288 96.9
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.0e-154 550.1 288 97.6
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 9.8e-153 543.5 289 96.2
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 8.3e-152 540.4 288 96.2
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 2.0e-150 535.8 282 97.5
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 2.7e-150 535.4 282 97.5
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.3e-149 533.1 288 94.8
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 3.0e-149 531.9 282 96.8
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.1e-143 511.5 290 90.0
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.0e-133 478.8 291 85.2
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 6.2e-131 471.1 290 83.1
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 4.6e-126 454.9 289 81.3
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.8e-126 454.1 289 80.6
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 7.8e-126 454.1 289 80.6
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 7.8e-126 454.1 295 78.0
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.3e-125 452.6 293 78.5
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.1e-124 450.3 289 79.6
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.3e-124 447.6 289 79.9
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.6e-123 445.3 289 79.2
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 4.7e-123 444.9 289 79.2
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.1e-122 443.7 289 78.9
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 5.3e-122 441.4 292 78.4
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 9.0e-122 440.7 290 79.0
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.2e-121 440.3 281 79.0
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.5e-121 439.9 289 77.9
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 2.0e-121 439.5 292 78.1
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 2.6e-121 439.1 289 77.5
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 2.6e-121 439.1 295 76.3
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.6e-121 439.1 290 78.6
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 3.4e-121 438.7 292 77.7
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 4.4e-121 438.3 291 75.9
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 2.2e-120 436.0 294 76.5
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.8e-120 435.3 292 78.1
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 6.4e-120 434.5 292 77.7
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 8.4e-120 434.1 294 76.2
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.9e-119 433.0 291 77.7
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 2.4e-119 432.6 290 76.9
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 3.2e-119 432.2 292 77.1
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.2e-119 432.2 294 75.5
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 4.2e-119 431.8 291 77.7
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 7.1e-119 431.0 294 74.8
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 7.1e-119 431.0 290 75.9
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 2.1e-118 429.5 290 75.5
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 2.7e-118 429.1 290 75.5
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 2.7e-118 429.1 297 74.7
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.0e-117 427.2 295 75.9
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 1.7e-117 426.4 295 75.6
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.7e-117 426.4 288 75.0
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.3e-117 426.0 292 77.1
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 6.6e-117 424.5 297 74.7
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.5e-116 423.3 288 75.7
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.3e-116 422.2 288 75.7
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 3.3e-116 422.2 293 74.7
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.3e-116 421.8 288 75.7
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 7.3e-116 421.0 290 73.8
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 9.6e-116 420.6 288 75.3
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.1e-115 419.5 292 74.7
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.8e-115 419.1 291 74.6
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.8e-115 419.1 291 74.6
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 3.6e-115 418.7 288 73.6
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 3.6e-115 418.7 292 75.0
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 4.8e-115 418.3 292 74.7
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 8.1e-115 417.5 288 75.0
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.1e-114 417.2 289 75.4
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.4e-114 416.8 294 74.5
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-114 416.8 288 75.0
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.8e-114 416.4 294 75.9
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.8e-114 416.4 291 74.6
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 3.1e-114 415.6 291 74.6
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 4.0e-114 415.2 291 73.2
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 4.0e-114 415.2 292 75.0
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 9.0e-114 414.1 294 73.1
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 9.0e-114 414.1 291 73.2
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 5.8e-113 411.4 280 76.8
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.7e-112 409.8 288 73.3
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 2.9e-112 409.1 291 74.2
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 6.4e-112 407.9 291 74.2
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 8.4e-112 407.5 281 73.7
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 1.9e-111 406.4 295 73.2
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.9e-111 406.4 288 73.3
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 3.2e-111 405.6 292 73.6
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.2e-111 405.6 289 72.7
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 9.3e-111 404.1 285 74.0
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 9.3e-111 404.1 291 71.8
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 1.6e-110 403.3 289 73.7
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.0e-109 400.6 296 72.6
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.3e-109 400.2 290 72.4
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.3e-109 400.2 289 70.2
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.3e-109 400.2 289 70.2
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.8e-109 399.8 291 72.5
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.3e-109 399.4 293 71.0
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 3.0e-109 399.1 292 71.2
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 3.9e-109 398.7 289 70.2
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.5e-108 396.7 293 70.3
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 4.3e-108 395.2 289 71.3
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 5.6e-108 394.8 292 69.5
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 7.4e-108 394.4 292 71.6
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 4.8e-107 391.7 292 70.2
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 8.1e-107 391.0 296 71.3
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.4e-106 390.2 292 71.6
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.8e-106 389.8 291 69.4
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 3.1e-106 389.0 295 71.9
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 4.0e-106 388.7 294 71.8
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 9.0e-106 387.5 278 74.1
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 9.0e-106 387.5 285 70.9
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 9.0e-106 387.5 295 69.2
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.6e-105 386.0 292 69.9
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 4.5e-105 385.2 293 70.3
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 5.8e-105 384.8 282 71.6
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 5.8e-105 384.8 291 71.8
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 9.9e-105 384.0 296 69.6
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.4e-103 380.2 289 69.9
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 2.1e-102 376.3 295 66.8
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.3e-101 373.6 286 70.6
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 7.4e-100 367.9 286 66.4
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.3e-99 367.1 273 69.2
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 2.0e-97 359.8 291 63.6
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.5e-97 358.6 292 67.1
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.0e-96 357.5 303 63.7
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 1.3e-96 357.1 294 64.3
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 1.9e-95 353.2 260 69.6
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.2e-94 350.5 295 65.4
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 6.0e-94 348.2 295 63.7
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 8.7e-93 344.4 291 65.6
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.5e-92 343.6 295 64.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 2.5e-92 342.8 300 62.3
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 7.4e-92 341.3 302 62.9
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.3e-91 340.5 293 64.5
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 3.7e-91 339.0 302 61.9
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 8.2e-91 337.8 293 63.8
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.0e-88 330.9 295 61.4
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 7.2e-87 324.7 291 59.8
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 8.8e-85 317.8 278 60.4
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.1e-84 317.4 247 68.0
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 7.4e-84 314.7 214 79.0
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 7.4e-76 288.1 277 57.8
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 4.1e-74 282.3 277 55.2
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 8.8e-69 264.6 194 73.7
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 7.4e-68 261.5 265 56.6
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 4.8e-59 232.3 143 79.0
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 5.3e-58 228.8 282 45.7
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 3.8e-56 222.6 278 50.0
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.0e-48 198.0 166 66.9
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.5e-47 194.1 126 73.0
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 1.5e-47 194.1 147 66.7
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.8e-42 177.2 145 67.6
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 9.8e-28 128.3 100 69.0
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 9.8e-28 128.3 112 63.4
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 2.7e-25 120.2 112 60.7
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.0e-24 118.2 285 31.2
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.6e-22 110.9 99 63.6
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 6.2e-22 109.0 72 77.8
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 4.6e-17 92.8 71 63.4
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 8.4e-11 72.0 72 56.9
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-10 71.6 87 56.3
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 9.6e-07 58.5 167 31.1
MD16G1097300 Malus domestica HOM05D005748 ORTHO05D007123 2.1e-06 57.4 163 28.2
TWI18G0424 Tripterygium wilfordii HOM05D005748 ORTHO05D007123 8.1e-06 55.5 166 31.3


User provided reference genes

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