Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 3.3e-53 211.5 108 100.0
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 3.0e-46 188.3 108 91.7
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.1e-43 179.9 108 88.9
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 9.3e-40 166.8 103 84.5
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 1.2e-39 166.4 103 87.4
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 1.0e-38 163.3 105 82.9
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 1.8e-38 162.5 103 82.5
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 5.1e-38 161.0 106 81.1
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 6.7e-38 160.6 108 80.6
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 6.7e-38 160.6 106 81.1
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 2.2e-36 155.6 102 81.4
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 8.2e-36 153.7 102 81.4
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.1e-35 153.3 102 79.4
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 4.5e-34 147.9 100 79.0
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 3.8e-33 144.8 102 77.5
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 1.0e-30 136.7 100 73.0
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 2.9e-25 118.6 123 56.1
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 6.5e-25 117.5 72 80.6
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.4e-24 116.3 119 55.5
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.6e-23 112.8 122 54.1
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.6e-23 112.8 122 51.6
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 2.7e-23 112.1 110 57.3
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 4.7e-23 111.3 75 81.3
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 4.7e-23 111.3 111 55.9
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 6.1e-23 110.9 117 54.7
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 6.1e-23 110.9 116 52.6
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 7.9e-23 110.5 110 58.2
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 7.9e-23 110.5 111 55.9
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.0e-22 110.2 124 51.6
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-22 109.8 124 51.6
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-22 109.8 124 51.6
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-22 109.8 124 51.6
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.4e-22 109.8 124 51.6
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.8e-22 109.4 120 55.0
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 2.3e-22 109.0 120 53.3
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.0e-22 108.6 124 51.6
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 3.9e-22 108.2 115 54.8
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.9e-22 108.2 124 50.8
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.9e-22 108.2 124 50.8
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.9e-22 108.2 114 50.9
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 5.1e-22 107.8 123 52.8
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.8e-22 107.1 124 50.8
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 8.8e-22 107.1 120 52.5
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-21 106.7 124 50.8
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 1.1e-21 106.7 123 48.8
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.5e-21 106.3 112 52.7
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.5e-21 106.3 104 52.9
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 2.0e-21 105.9 116 52.6
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 3.3e-21 105.1 112 51.8
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 3.3e-21 105.1 98 57.1
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 3.3e-21 105.1 125 52.0
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 4.4e-21 104.8 110 52.7
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 4.4e-21 104.8 99 59.6
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 7.4e-21 104.0 110 49.1
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 7.4e-21 104.0 110 49.1
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 7.4e-21 104.0 113 54.0
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 9.7e-21 103.6 113 54.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 9.7e-21 103.6 111 52.3
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 1.7e-20 102.8 121 49.6
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-20 102.8 131 48.9
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.7e-20 102.8 108 56.5
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 2.8e-20 102.1 110 50.9
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 2.8e-20 102.1 116 51.7
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 3.7e-20 101.7 107 53.3
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 3.7e-20 101.7 111 52.3
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 3.7e-20 101.7 122 46.7
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.7e-20 101.7 124 50.8
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 3.7e-20 101.7 125 45.6
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.7e-20 101.7 113 52.2
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 4.8e-20 101.3 111 52.3
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 1.1e-19 100.1 112 51.8
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.1e-19 100.1 112 51.8
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 1.1e-19 100.1 108 52.8
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 1.4e-19 99.8 110 51.8
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.4e-19 99.8 124 50.0
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 1.4e-19 99.8 112 51.8
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.8e-19 99.4 119 47.1
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 1.8e-19 99.4 119 47.9
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.8e-19 99.4 110 50.9
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 2.4e-19 99.0 119 47.1
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.1e-19 98.6 124 50.0
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 5.3e-19 97.8 112 49.1
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 5.3e-19 97.8 113 48.7
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 6.9e-19 97.4 128 46.1
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 1.2e-18 96.7 118 48.3
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 1.5e-18 96.3 111 49.5
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.5e-18 96.3 125 48.0
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.0e-18 95.9 124 46.8
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 2.6e-18 95.5 111 50.5
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 2.6e-18 95.5 133 46.6
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 3.4e-18 95.1 67 79.1
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 3.4e-18 95.1 112 49.1
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 3.4e-18 95.1 106 49.1
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 7.7e-18 94.0 129 48.1
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 1.0e-17 93.6 110 46.4
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 1.3e-17 93.2 112 51.8
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 1.7e-17 92.8 67 77.6
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 2.9e-17 92.0 123 48.8
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 2.9e-17 92.0 102 48.0
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.0e-17 91.3 88 54.5
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 1.1e-16 90.1 74 59.5
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.1e-16 90.1 109 49.5
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.9e-16 89.4 114 44.7
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.5e-16 89.0 132 42.4
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 3.2e-16 88.6 120 45.8
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 4.2e-16 88.2 111 49.5
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 2.1e-15 85.9 111 42.3
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 2.7e-15 85.5 62 64.5
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.3e-14 82.4 117 44.4
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 8.8e-14 80.5 96 52.1
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 8.8e-14 80.5 100 43.0
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.5e-13 79.7 61 63.9
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 2.0e-13 79.3 98 43.9
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.0e-13 79.3 64 54.7
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 7.4e-13 77.4 117 40.2
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 2.2e-12 75.9 60 60.0
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 6.3e-12 74.3 108 43.5
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 3.1e-11 72.0 108 43.5
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 3.5e-10 68.6 108 40.7
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 3.5e-10 68.6 82 47.6
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 5.9e-10 67.8 84 48.8
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 7.7e-10 67.4 45 68.9
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-09 66.6 92 45.7
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 5.0e-09 64.7 45 68.9
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 6.5e-09 64.3 45 68.9
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.5e-08 63.2 112 37.5
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.9e-08 62.8 84 45.2
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 2.7e-07 58.9 44 68.2
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.6e-07 58.5 92 44.6
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 8.0e-07 57.4 45 57.8
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.0e-06 57.0 49 51.0


User provided reference genes

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